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    gadr-3 Gastrulation-defective protein 3 [ Caenorhabditis elegans ]

    Gene ID: 185933, updated on 9-Dec-2024

    Summary

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    Official Symbol
    gadr-3
    Official Full Name
    Gastrulation-defective protein 3
    Primary source
    WormBase:WBGene00018561
    Locus tag
    CELE_F47D12.5
    See related
    AllianceGenome:WB:WBGene00018561
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Predicted to be part of Cul2-RING ubiquitin ligase complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See gadr-3 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    8
    Sequence:
    Chromosome: III; NC_003281.10 (6282380..6285990, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene WSN domain-containing protein Neighboring gene ANK_REP_REGION domain-containing protein Neighboring gene High mobility group protein 1.2 Neighboring gene Uncharacterized protein Neighboring gene Kelch repeat and BTB domain-containing protein F47D12.7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overcoming redundancy: an RNAi enhancer screen for morphogenesis genes in Caenorhabditis elegans. Sawyer JM, et al. Genetics, 2011 Jul. PMID 21527776, Free PMC Article
    2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of Cul2-RING ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Gastrulation-defective protein 3
    NP_498378.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6282380..6285990 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065977.6 → NP_498378.2  Gastrulation-defective protein 3 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498378.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q09562
      Conserved Domains (1) summary
      cl42388
      Location:176 → 231
      PPP1R42; protein phosphatase 1 regulatory subunit 42
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q09562.2

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