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    C55A6.12 THAP4-like heme-binding beta-barrel domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 3565529, updated on 18-Sep-2024

    Summary

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    Official Symbol
    C55A6.12
    Official Full Name
    THAP4-like heme-binding beta-barrel domain-containing protein
    Primary source
    WormBase:WBGene00044019
    Locus tag
    CELE_C55A6.12
    See related
    AllianceGenome:WB:WBGene00044019
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See C55A6.12 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (11501374..11503131, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene E3 ubiquitin-protein ligase Neighboring gene Macro domain-containing protein;NARG2_C domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    THAP4-like heme-binding beta-barrel domain-containing protein
    NP_001023742.2
    • Confirmed by transcript evidence
    NP_001294704.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      11501374..11503131 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001028571.5 → NP_001023742.2  THAP4-like heme-binding beta-barrel domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001023742.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5FC47
      Conserved Domains (1) summary
      cd07828
      Location:34 → 193
      lipocalin_heme-bd-THAP4-like; heme-binding beta-barrel domain of human THAP4, Arabidopsis thaliana nitrobindin, and similar proteins

    2. NM_001307775.3 → NP_001294704.1  THAP4-like heme-binding beta-barrel domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294704.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      N1NVC0
      Conserved Domains (1) summary
      cl10502
      Location:11 → 97
      lipocalin_FABP; lipocalin/cytosolic fatty acid-binding protein family
    Nucleotide Protein
    Heading Accession and Version

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