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    ripor3 RIPOR family member 3 [ Danio rerio (zebrafish) ]

    Gene ID: 503535, updated on 4-Jan-2025

    Summary

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    Official Symbol
    ripor3provided by ZNC
    Official Full Name
    RIPOR family member 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050220-13
    See related
    Ensembl:ENSDARG00000020979 AllianceGenome:ZFIN:ZDB-GENE-050220-13
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fam65c; zgc:113070; si:dkey-107i16.2
    Summary
    Orthologous to human RIPOR3 (RIPOR family member 3). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See ripor3 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (51676414..51763503)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (51676200..51763504)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene retinoblastoma-like 1 (p107) Neighboring gene chromodomain helicase DNA binding protein 6 Neighboring gene transmembrane protein 74B Neighboring gene bladder cancer associated protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Maternal Ybx1 safeguards zebrafish oocyte maturation and maternal-to-zygotic transition by repressing global translation. Sun J, et al. Development, 2018 Oct 2. PMID 30135188
    2. Global analysis of the haematopoietic and endothelial transcriptome during zebrafish development. Cannon JE, et al. Mech Dev, 2013 Feb. PMID 23072875, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RIPOR family member 3
    Names
    family with sequence similarity 65, member C
    protein FAM65C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012499.3 → NP_001012517.2  RIPOR family member 3

      Status: VALIDATED

      Source sequence(s)
      BX001037, BX571978
      UniProtKB/Swiss-Prot
      Q5EB20
      UniProtKB/TrEMBL
      A0A8M3ATQ2
      Related
      ENSDARP00000119471.1, ENSDART00000146281.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      51676414..51763503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009302697.4 → XP_009300972.1  RIPOR family member 3 isoform X1

      UniProtKB/Swiss-Prot
      Q5EB20
      UniProtKB/TrEMBL
      A0A8M3ATQ2
      Conserved Domains (3) summary
      pfam13646
      Location:855 → 941
      HEAT_2; HEAT repeats
      pfam15903
      Location:16 → 360
      PL48; Filopodia upregulated, FAM65
      sd00044
      Location:821 → 842
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5EB20.1 GenPept UniProtKB/Swiss-Prot:Q5EB20

    Gene LinkOut

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