Wdr20rt WD repeat domain 20, retrogene [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Wdr20rtprovided by MGI
Official Full Name: WD repeat domain 20, retrogeneprovided by MGI
Primary source: MGI:MGI:1918198
See related: Ensembl:ENSMUSG00000035560 AllianceGenome:MGI:1918198
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Wdr20; Wdr20b; 4921538B03Rik; 4930427E19Rik
Summary: Predicted to enable deubiquitinase activator activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human WDR20 (WD repeat domain 20). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in testis adult (RPKM 29.9) and thymus adult (RPKM 0.8) See more
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Genomic context

Location:: 12 C1; 12 27.21 cM

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	12	NC_000078.7 (65272291..65275228)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	12	NC_000078.6 (65225517..65228454)

Chromosome 12 - NC_000078.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables deubiquitinase activator activity	ISO Inferred from Sequence Orthology more info
enables deubiquitinase activator activity	ISS Inferred from Sequence or Structural Similarity more info
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleus	ISO Inferred from Sequence Orthology more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: WD repeat-containing protein 20

Names: WD repeat domain 20b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_027614.1 → NP_081890.1 WD repeat-containing protein 20

See identical proteins and their annotated locations for NP_081890.1

Status: PROVISIONAL

Source sequence(s)

AK015014

Consensus CDS

CCDS25943.1

UniProtKB/Swiss-Prot

Q80X67, Q9D5L0, Q9D5R2

UniProtKB/TrEMBL

Q3ULP2

Related

ENSMUSP00000036682.5, ENSMUST00000046331.5

Conserved Domains (2) summary

sd00039
Location:102 → 143

7WD40; WD40 repeat [structural motif]

cl29593
Location:149 → 317

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...