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    Scpep1os serine carboxypeptidase 1, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 73921, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Scpep1osprovided by MGI
    Official Full Name
    serine carboxypeptidase 1, opposite strandprovided by MGI
    Primary source
    MGI:MGI:1921171
    See related
    Ensembl:ENSMUSG00000087338 AllianceGenome:MGI:1921171
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930405P13Rik
    Expression
    Broad expression in placenta adult (RPKM 10.1), bladder adult (RPKM 4.6) and 19 other tissues See more
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    Genomic context

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    See Scpep1os in Genome Data Viewer
    Location:
    11 C; 11 54.34 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (88796754..88826887)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (88905928..88936061)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene A kinase anchor protein 1 Neighboring gene RIKEN cDNA 4930556N13 gene Neighboring gene STARR-positive B cell enhancer ABC_E7042 Neighboring gene predicted gene, 23507 Neighboring gene STARR-seq mESC enhancer starr_30370 Neighboring gene serine carboxypeptidase 1 Neighboring gene STARR-seq mESC enhancer starr_30374 Neighboring gene STARR-positive B cell enhancer ABC_E3993 Neighboring gene STARR-seq mESC enhancer starr_30376 Neighboring gene transcription elongation factor B (SIII), polypeptide 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_30377 Neighboring gene STARR-positive B cell enhancer ABC_E10705 Neighboring gene elongin B-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045955.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AK015102
      Related
      ENSMUST00000139592.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      88796754..88826887
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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