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    Jrkl Jrk-like [ Mus musculus (house mouse) ]

    Gene ID: 77532, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Jrklprovided by MGI
    Official Full Name
    Jrk-likeprovided by MGI
    Primary source
    MGI:MGI:1924782
    See related
    Ensembl:ENSMUSG00000079083 AllianceGenome:MGI:1924782
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    HHMJG; C030035D04Rik
    Summary
    Predicted to enable DNA binding activity. Predicted to be active in nucleus. Orthologous to human JRKL (JRK like). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human all
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    Genomic context

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    See Jrkl in Genome Data Viewer
    Location:
    9; 9 A1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (13242795..13245746, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (13242790..13245741, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_23325 Neighboring gene STARR-seq mESC enhancer starr_23326 Neighboring gene heat shock protein 1 (chaperonin) pseudogene 15 Neighboring gene STARR-seq mESC enhancer starr_23327 Neighboring gene STARR-seq mESC enhancer starr_23328 Neighboring gene STARR-seq mESC enhancer starr_23329 Neighboring gene STARR-seq mESC enhancer starr_23330 Neighboring gene RIKEN cDNA 4930568E12 gene Neighboring gene STARR-seq mESC enhancer starr_23331 Neighboring gene coiled-coil domain containing 82 Neighboring gene predicted gene, 26189 Neighboring gene mastermind like transcriptional coactivator 2 Neighboring gene per-hexamer repeat gene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    jerky protein homolog-like
    Names
    jerky homolog-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033181.1 → NP_001028353.1  jerky protein homolog-like

      See identical proteins and their annotated locations for NP_001028353.1

      Status: VALIDATED

      Source sequence(s)
      BB210598, BC138472
      Consensus CDS
      CCDS57650.1
      UniProtKB/Swiss-Prot
      B2RRL2, Q3V2Y6
      Related
      ENSMUSP00000128798.2, ENSMUST00000110582.4
      Conserved Domains (3) summary
      smart00674
      Location:73 → 139
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      pfam03184
      Location:206 → 385
      DDE_1; DDE superfamily endonuclease
      cl21459
      Location:4 → 52
      HTH; Helix-turn-helix domains

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      13242795..13245746 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B2RRL2.1 GenPept UniProtKB/Swiss-Prot:B2RRL2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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