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    Rp9 RP9, pre-mRNA splicing factor [ Rattus norvegicus (Norway rat) ]

    Gene ID: 363032, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Rp9provided by RGD
    Official Full Name
    RP9, pre-mRNA splicing factorprovided by RGD
    Primary source
    RGD:1559759
    See related
    EnsemblRapid:ENSRNOG00000029456 AllianceGenome:RGD:1559759
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Rp9h; RGD1559759
    Summary
    Predicted to be involved in cognition. Predicted to be part of signal recognition particle receptor complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa 9. Orthologous to human RP9 (RP9 pre-mRNA splicing factor). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Spleen (RPKM 38.1), Lung (RPKM 33.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rp9 in Genome Data Viewer
    Location:
    8q13
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (29218564..29281211, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (20955447..21005225, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (23450111..23482939, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA70 Neighboring gene anillin, actin binding protein Neighboring gene microtubule associated tyrosine carboxypeptidase 2 Neighboring gene uncharacterized LOC134480149 Neighboring gene Bardet-Biedl syndrome 9 Neighboring gene U4 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. CIR, a corepressor of CBF1, binds to PAP-1 and effects alternative splicing. Maita H, et al. Exp Cell Res, 2005 Feb 15. PMID 15652350
    2. Analysis of copy number variation in Alzheimer's disease in a cohort of clinically characterized and neuropathologically verified individuals. Swaminathan S, et al. PLoS One, 2012. PMID 23227193, Free PMC Article
    3. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cognition ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    part_of signal recognition particle receptor complex ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    retinitis pigmentosa 9 protein
    Names
    retinitis pigmentosa 9 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108756.1 → NP_001102226.1  retinitis pigmentosa 9 protein isoform 2

      See identical proteins and their annotated locations for NP_001102226.1

      Status: VALIDATED

      Source sequence(s)
      CH473993
      UniProtKB/TrEMBL
      A0A8I6AFT5, A6JP01, F1LYD8
      Related
      ENSRNOP00000060995.3, ENSRNOT00000065367.4

    2. NM_001401177.1 → NP_001388106.1  retinitis pigmentosa 9 protein isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A0A8I6A7C2, A6JP02
      Related
      ENSRNOP00000087499.1, ENSRNOT00000107195.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      29218564..29281211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039081716.2 → XP_038937644.1  retinitis pigmentosa 9 protein isoform X2

      UniProtKB/TrEMBL
      A0A8I6AFT5

    2. XM_039081715.2 → XP_038937643.1  retinitis pigmentosa 9 protein isoform X1

      UniProtKB/TrEMBL
      A0A8I6AFT5
    Nucleotide Protein Strain
    Heading Accession and Version

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