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    LIPT2-AS1 LIPT2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100287896, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LIPT2-AS1provided by HGNC
    Official Full Name
    LIPT2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:56172
    See related
    Ensembl:ENSG00000254837 AllianceGenome:HGNC:56172
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in ovary (RPKM 4.4), thyroid (RPKM 3.6) and 24 other tissues See more
    Orthologs
    all
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    Genomic context

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    See LIPT2-AS1 in Genome Data Viewer
    Location:
    11q13.4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (74493380..74498533)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (74422813..74427971)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (74204425..74209578)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene probable ribosome biogenesis protein RLP24 Neighboring gene CYCS pseudogene 27 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3753 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3754 Neighboring gene lipoyl(octanoyl) transferase 2 Neighboring gene uncharacterized LOC124902712 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:74249649-74250198 Neighboring gene uncharacterized LOC105369386

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Expressed sequence tag analysis of human RPE/choroid for the NEIBank Project: over 6000 non-redundant transcripts, novel genes and splice variants. Wistow G, et al. Mol Vis, 2002 Jun 15. PMID 12107410
    2. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC12965, AP001372.2, DKFZp686O15256

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_171028.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP001372
      Related
      ENST00000526036.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      74493380..74498533
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      74422813..74427971
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001319240.2: Suppressed sequence

      Description
      NM_001319240.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    2. NM_198519.1: Suppressed sequence

      Description
      NM_198519.1: This RefSeq was permanently suppressed because it is mostly repetitive sequence.
    Nucleotide Protein
    Heading Accession and Version

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