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    HSALR1 HSP90AB1 associated lncRNA 1 [ Homo sapiens (human) ]

    Gene ID: 100289580, updated on 28-Oct-2024

    Summary

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    Official Symbol
    HSALR1provided by HGNC
    Official Full Name
    HSP90AB1 associated lncRNA 1provided by HGNC
    Primary source
    HGNC:HGNC:56095
    See related
    AllianceGenome:HGNC:56095
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in fat (RPKM 2.4), spleen (RPKM 1.6) and 23 other tissues See more
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    Genomic context

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    See HSALR1 in Genome Data Viewer
    Location:
    16q24.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (88731180..88741425)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (94801738..94813000)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (88797588..88807833)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:88772291-88772928 Neighboring gene cytosolic thiouridylase subunit 2 Neighboring gene microRNA 4722 Neighboring gene piezo type mechanosensitive ion channel component 1 (Er blood group) Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7872 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88810272-88810958 Neighboring gene PIEZO1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7873 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88829625-88830384 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88830385-88831146 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88834041-88834626 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88834627-88835210 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88835211-88835794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88836379-88836962 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88836963-88837546 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:88842592-88843342 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11369 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11370 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11371 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11372 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7874 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88850859-88851772 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:88856742-88857272 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88869451-88870026 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7878 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88870745-88871628 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88871629-88872511 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88873249-88873762 Neighboring gene chromatin licensing and DNA replication factor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Smad3-mediated lncRNA HSALR1 enhances the non-classic signalling pathway of TGF-β1 in human bronchial fibroblasts by binding to HSP90AB1. Yi E, et al. Clin Transl Med, 2023 Jun. PMID 37317677, Free PMC Article
    2. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Clone Names

    • FLJ45121, FLJ53866

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103774.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC138028

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      88731180..88741425
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      94801738..94813000
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_207451.1: Suppressed sequence

      Description
      NM_207451.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein
    Heading Accession and Version

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