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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001291245.2 → NP_001278174.1 DNA ligase 3 isoform a
See identical proteins and their annotated locations for NP_001278174.1
Status: VALIDATED
- Source sequence(s)
-
AL645594
- Consensus CDS
-
CCDS25147.1
- UniProtKB/Swiss-Prot
- E9QL81, P97385, P97386
- UniProtKB/TrEMBL
- Q3U1F0, Q80ZH7
- Related
- ENSMUSP00000133805.2, ENSMUST00000173722.8
- Conserved Domains (3) summary
-
- TIGR00574
Location:320 → 832
- dnl1; DNA ligase I, ATP-dependent (dnl1)
- pfam00645
Location:97 → 182
- zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
- pfam16759
Location:936 → 1007
- LIG3_BRCT; DNA ligase 3 BRCT domain
-
NM_001291246.2 → NP_001278175.1 DNA ligase 3 isoform b
See identical proteins and their annotated locations for NP_001278175.1
Status: VALIDATED
- Source sequence(s)
-
AL645594
- Consensus CDS
-
CCDS70266.1
- UniProtKB/TrEMBL
- Q3U1F0, Q3UC82
- Related
- ENSMUSP00000134300.2, ENSMUST00000173347.8
- Conserved Domains (6) summary
-
- cd07967
Location:687 → 825
- OBF_DNA_ligase_III; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit
- cd07902
Location:469 → 681
- Adenylation_DNA_ligase_III; Adenylation domain of DNA Ligase III
- TIGR00574
Location:319 → 831
- dnl1; DNA ligase I, ATP-dependent (dnl1)
- pfam00645
Location:98 → 178
- zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
- pfam04675
Location:265 → 430
- DNA_ligase_A_N; DNA ligase N terminus
- pfam16759
Location:935 → 1006
- LIG3_BRCT; DNA ligase 3 BRCT domain
-
NM_001291247.2 → NP_001278176.1 DNA ligase 3 isoform b
See identical proteins and their annotated locations for NP_001278176.1
Status: VALIDATED
- Source sequence(s)
-
AL645594
- Consensus CDS
-
CCDS70266.1
- UniProtKB/TrEMBL
- Q3U1F0, Q3UC82
- Related
- ENSMUSP00000133849.2, ENSMUST00000173727.8
- Conserved Domains (6) summary
-
- cd07967
Location:687 → 825
- OBF_DNA_ligase_III; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit
- cd07902
Location:469 → 681
- Adenylation_DNA_ligase_III; Adenylation domain of DNA Ligase III
- TIGR00574
Location:319 → 831
- dnl1; DNA ligase I, ATP-dependent (dnl1)
- pfam00645
Location:98 → 178
- zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
- pfam04675
Location:265 → 430
- DNA_ligase_A_N; DNA ligase N terminus
- pfam16759
Location:935 → 1006
- LIG3_BRCT; DNA ligase 3 BRCT domain
-
NM_001403856.1 → NP_001390785.1 DNA ligase 3 isoform a
Status: VALIDATED
- Source sequence(s)
-
AL645594
- UniProtKB/Swiss-Prot
- E9QL81, P97385, P97386
- UniProtKB/TrEMBL
- Q3U1F0, Q80ZH7
-
NM_001403857.1 → NP_001390786.1 DNA ligase 3 isoform a
Status: VALIDATED
- Source sequence(s)
-
AL645594
- UniProtKB/Swiss-Prot
- E9QL81, P97385, P97386
- UniProtKB/TrEMBL
- Q3U1F0, Q80ZH7
-
NM_001403858.1 → NP_001390787.1 DNA ligase 3 isoform b
Status: VALIDATED
- Source sequence(s)
-
AL645594
- UniProtKB/TrEMBL
- Q3U1F0, Q3UC82
-
NM_001403859.1 → NP_001390788.1 DNA ligase 3 isoform c
Status: VALIDATED
- Source sequence(s)
-
AL645594
- UniProtKB/Swiss-Prot
- E9QL81, P97385, P97386
-
NM_001403860.1 → NP_001390789.1 DNA ligase 3 isoform d
Status: VALIDATED
- Source sequence(s)
-
AL645594
- UniProtKB/TrEMBL
-
Q3U1F0
-
NM_001403861.1 → NP_001390790.1 DNA ligase 3 isoform e
Status: VALIDATED
- Source sequence(s)
-
AL645594
- UniProtKB/Swiss-Prot
- E9QL81, P97385, P97386
-
NM_001403862.1 → NP_001390791.1 DNA ligase 3 isoform f
Status: VALIDATED
- Source sequence(s)
-
AL645594
- UniProtKB/Swiss-Prot
- E9QL81, P97385, P97386
-
NM_001403863.1 → NP_001390792.1 DNA ligase 3 isoform g
Status: VALIDATED
- Source sequence(s)
-
AL645594
- UniProtKB/Swiss-Prot
- E9QL81, P97385, P97386
- UniProtKB/TrEMBL
-
B1AT03
- Related
- ENSMUSP00000079317.6, ENSMUST00000080461.12
-
NM_001403864.1 → NP_001390793.1 DNA ligase 3 isoform h
Status: VALIDATED
- Source sequence(s)
-
AL645594
- UniProtKB/TrEMBL
-
Q3U1F0
-
NM_001403865.1 → NP_001390794.1 DNA ligase 3 isoform i
Status: VALIDATED
- Source sequence(s)
-
AL645594
- UniProtKB/Swiss-Prot
- E9QL81, P97385, P97386
-
NM_010716.4 → NP_034846.2 DNA ligase 3 isoform a
See identical proteins and their annotated locations for NP_034846.2
Status: VALIDATED
- Source sequence(s)
-
AL645594
- Consensus CDS
-
CCDS25147.1
- UniProtKB/Swiss-Prot
- E9QL81, P97385, P97386
- UniProtKB/TrEMBL
- Q3U1F0, Q80ZH7
- Related
- ENSMUSP00000090525.6, ENSMUST00000092849.12
- Conserved Domains (3) summary
-
- TIGR00574
Location:320 → 832
- dnl1; DNA ligase I, ATP-dependent (dnl1)
- pfam00645
Location:97 → 182
- zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
- pfam16759
Location:936 → 1007
- LIG3_BRCT; DNA ligase 3 BRCT domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000077.7 Reference GRCm39 C57BL/6J
- Range
-
82671977..82695100
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006532353.5 → XP_006532416.1 DNA ligase 3 isoform X3
- UniProtKB/Swiss-Prot
- E9QL81, P97385, P97386
- Conserved Domains (2) summary
-
- TIGR00574
Location:374 → 886
- dnl1; DNA ligase I, ATP-dependent (dnl1)
- pfam00645
Location:151 → 236
- zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
-
XM_006532348.5 → XP_006532411.1 DNA ligase 3 isoform X2
- UniProtKB/TrEMBL
-
Q3U1F0
- Conserved Domains (3) summary
-
- TIGR00574
Location:373 → 885
- dnl1; DNA ligase I, ATP-dependent (dnl1)
- pfam00645
Location:151 → 236
- zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
- pfam16759
Location:989 → 1060
- LIG3_BRCT; DNA ligase 3 BRCT domain
RNA
-
XR_004936802.1 RNA Sequence