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    Gata3os GATA binding protein 3 opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 381347, updated on 17-Aug-2024

    Summary

    Official Symbol
    Gata3osprovided by MGI
    Official Full Name
    GATA binding protein 3 opposite strandprovided by MGI
    Primary source
    MGI:MGI:1921185
    See related
    AllianceGenome:MGI:1921185
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gata3as; Gm10853; 4930412O13Rik
    Expression
    Biased expression in testis adult (RPKM 9.4), bladder adult (RPKM 8.0) and 8 other tissues See more
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    Genomic context

    See Gata3os in Genome Data Viewer
    Location:
    2 A1; 2 6.71 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (9886057..9891578)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (9881246..9886767)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:9515681-9515868 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:9517012-9517347 Neighboring gene STARR-seq mESC enhancer starr_03623 Neighboring gene distal regulatory enhancer RNA of Gata3 Neighboring gene STARR-seq mESC enhancer starr_03624 Neighboring gene STARR-seq mESC enhancer starr_03625 Neighboring gene STARR-seq mESC enhancer starr_03626 Neighboring gene predicted gene, 54101 Neighboring gene STARR-seq mESC enhancer starr_03630 Neighboring gene GATA binding protein 3 Neighboring gene STARR-seq mESC enhancer starr_03633 Neighboring gene STARR-seq mESC enhancer starr_03634 Neighboring gene Gata3 upstream neighbor Neighboring gene predicted gene 13262 Neighboring gene predicted gene, 31290 Neighboring gene TATA-box binding protein associated factor 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024257.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AI506089, AK015124, AL928704, CN834282

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      9886057..9891578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)