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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001291233.2 → NP_001278162.1 homeobox protein cut-like 1 isoform c
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- UniProtKB/TrEMBL
-
H3BJQ9
- Related
- ENSMUSP00000135086.2, ENSMUST00000176172.8
- Conserved Domains (4) summary
-
- pfam00046
Location:1340 → 1393
- Homeobox; Homeobox domain
- pfam00901
Location:171 → 446
- Orbi_VP5; Orbivirus outer capsid protein VP5
- pfam02376
Location:1215 → 1292
- CUT; CUT domain
- pfam13851
Location:216 → 437
- GAS; Growth-arrest specific micro-tubule binding
-
NM_001291234.2 → NP_001278163.1 homeobox protein cut-like 1 isoform d
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- Consensus CDS
-
CCDS71684.1
- UniProtKB/Swiss-Prot
- O08994, P53564, P70301, Q571L6, Q91ZD2
- UniProtKB/TrEMBL
-
H3BK24
- Related
- ENSMUSP00000135223.3, ENSMUST00000175975.9
- Conserved Domains (5) summary
-
- pfam00046
Location:1231 → 1284
- Homeobox; Homeobox domain
- pfam02376
Location:1106 → 1183
- CUT; CUT domain
- pfam13851
Location:131 → 350
- GAS; Growth-arrest specific micro-tubule binding
- cl23720
Location:290 → 372
- RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
- cl23765
Location:108 → 248
- iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
-
NM_001291238.2 → NP_001278167.1 protein CASP isoform e
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- Consensus CDS
-
CCDS71685.1
- UniProtKB/Swiss-Prot
- P70403, Q7TQJ4, Q91WN6
- UniProtKB/TrEMBL
-
H3BJN3
- Related
- ENSMUSP00000135054.2, ENSMUST00000176216.9
- Conserved Domains (3) summary
-
- pfam00901
Location:86 → 361
- Orbi_VP5; Orbivirus outer capsid protein VP5
- pfam08172
Location:423 → 638
- CASP_C; CASP C terminal
- pfam13851
Location:131 → 352
- GAS; Growth-arrest specific micro-tubule binding
-
NM_001291239.2 → NP_001278168.1 protein CASP isoform f
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- UniProtKB/TrEMBL
-
Q9JJB6
- Conserved Domains (4) summary
-
- pfam07851
Location:390 → 494
- TMPIT; TMPIT-like protein
- pfam08172
Location:506 → 721
- CASP_C; CASP C terminal
- pfam13851
Location:216 → 435
- GAS; Growth-arrest specific micro-tubule binding
- pfam15290
Location:231 → 374
- Syntaphilin; Golgi-localized syntaxin-1-binding clamp
-
NM_001291240.2 → NP_001278169.1 protein CASP isoform g
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- UniProtKB/TrEMBL
-
Q9JJB6
- Conserved Domains (3) summary
-
- pfam00901
Location:171 → 446
- Orbi_VP5; Orbivirus outer capsid protein VP5
- pfam08172
Location:508 → 723
- CASP_C; CASP C terminal
- pfam13851
Location:216 → 437
- GAS; Growth-arrest specific micro-tubule binding
-
NM_001405079.1 → NP_001392008.1 homeobox protein cut-like 1 isoform h
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- UniProtKB/TrEMBL
-
H3BJQ9
-
NM_001405081.1 → NP_001392010.1 homeobox protein cut-like 1 isoform i
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- UniProtKB/TrEMBL
-
H3BJQ9
-
NM_001405082.1 → NP_001392011.1 homeobox protein cut-like 1 isoform j
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- UniProtKB/TrEMBL
-
H3BJQ9
- Related
- ENSMUSP00000135370.3, ENSMUST00000176486.9
-
NM_001405083.1 → NP_001392012.1 homeobox protein cut-like 1 isoform k
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- UniProtKB/TrEMBL
-
Q5BL05
-
NM_001405084.1 → NP_001392013.1 homeobox protein cut-like 1 isoform l
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- UniProtKB/TrEMBL
-
Q5BL05
-
NM_001405085.1 → NP_001392014.1 protein CASP isoform m
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- UniProtKB/TrEMBL
-
Q9JJB6
-
NM_001405086.1 → NP_001392015.1 protein CASP isoform n
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- UniProtKB/Swiss-Prot
- P70403, Q7TQJ4, Q91WN6
-
NM_009986.5 → NP_034116.3 homeobox protein cut-like 1 isoform a
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- Consensus CDS
-
CCDS39328.1
- UniProtKB/TrEMBL
- E9QKE9, Q5BL05
- Related
- ENSMUSP00000004097.9, ENSMUST00000004097.16
- Conserved Domains (4) summary
-
- pfam00046
Location:1153 → 1206
- Homeobox; Homeobox domain
- pfam00901
Location:86 → 361
- Orbi_VP5; Orbivirus outer capsid protein VP5
- pfam02376
Location:1028 → 1105
- CUT; CUT domain
- pfam13851
Location:131 → 352
- GAS; Growth-arrest specific micro-tubule binding
-
NM_198602.4 → NP_941004.2 protein CASP isoform b
Status: VALIDATED
- Source sequence(s)
-
AC080158, AC083890, AC087329
- Consensus CDS
-
CCDS57391.1
- UniProtKB/Swiss-Prot
- P70403, Q7TQJ4, Q91WN6
- UniProtKB/TrEMBL
-
H3BKT0
- Related
- ENSMUSP00000135512.2, ENSMUST00000176745.8
- Conserved Domains (3) summary
-
- pfam07851
Location:305 → 409
- TMPIT; TMPIT-like protein
- pfam08172
Location:421 → 636
- CASP_C; CASP C terminal
- pfam15290
Location:146 → 289
- Syntaphilin; Golgi-localized syntaxin-1-binding clamp
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000071.7 Reference GRCm39 C57BL/6J
- Range
-
136276989..136596429 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_030254113.2 → XP_030109973.1 homeobox protein cut-like 1 isoform X12
- UniProtKB/TrEMBL
-
Q5BL05
- Conserved Domains (4) summary
-
- PHA03247
Location:634 → 817
- PHA03247; large tegument protein UL36; Provisional
- TIGR02169
Location:18 → 368
- SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
- pfam00046
Location:1131 → 1185
- Homeobox; Homeobox domain
- pfam02376
Location:1006 → 1079
- CUT; CUT domain
-
XM_036164773.1 → XP_036020666.1 homeobox protein cut-like 1 isoform X9
- UniProtKB/TrEMBL
-
H3BJQ9
- Conserved Domains (4) summary
-
- PHA03247
Location:736 → 919
- PHA03247; large tegument protein UL36; Provisional
- COG1196
Location:16 → 377
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- pfam00046
Location:1233 → 1287
- Homeobox; Homeobox domain
- pfam02376
Location:1108 → 1185
- CUT; CUT domain
-
XM_030254110.2 → XP_030109970.1 homeobox protein cut-like 1 isoform X10
- UniProtKB/TrEMBL
-
Q5BL05
- Conserved Domains (4) summary
-
- PHA03247
Location:680 → 863
- PHA03247; large tegument protein UL36; Provisional
- COG0419
Location:17 → 430
- SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
- pfam00046
Location:1177 → 1231
- Homeobox; Homeobox domain
- pfam02376
Location:1052 → 1125
- CUT; CUT domain
-
XM_030254108.2 → XP_030109968.1 homeobox protein cut-like 1 isoform X5
- UniProtKB/TrEMBL
-
H3BJQ9
- Conserved Domains (4) summary
-
- PHA03247
Location:760 → 943
- PHA03247; large tegument protein UL36; Provisional
- TIGR04523
Location:17 → 399
- Mplasa_alph_rch; helix-rich Mycoplasma protein
- pfam00046
Location:1257 → 1311
- Homeobox; Homeobox domain
- pfam02376
Location:1132 → 1205
- CUT; CUT domain
-
XM_030254106.2 → XP_030109966.1 homeobox protein cut-like 1 isoform X2
- UniProtKB/TrEMBL
-
H3BJQ9
- Conserved Domains (4) summary
-
- PHA03247
Location:845 → 1028
- PHA03247; large tegument protein UL36; Provisional
- COG0419
Location:103 → 482
- SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
- pfam00046
Location:1342 → 1396
- Homeobox; Homeobox domain
- pfam02376
Location:1217 → 1290
- CUT; CUT domain
-
XM_017320654.3 → XP_017176143.1 homeobox protein cut-like 1 isoform X1
- UniProtKB/TrEMBL
-
H3BJQ9
- Conserved Domains (4) summary
-
- PHA03247
Location:867 → 1050
- PHA03247; large tegument protein UL36; Provisional
- COG0419
Location:103 → 482
- SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
- pfam00046
Location:1364 → 1418
- Homeobox; Homeobox domain
- pfam02376
Location:1239 → 1312
- CUT; CUT domain
-
XM_006504354.4 → XP_006504417.1 homeobox protein cut-like 1 isoform X8
- UniProtKB/TrEMBL
- H3BLS0, Q5BL05
- Related
- ENSMUSP00000135892.2, ENSMUST00000176778.8
- Conserved Domains (5) summary
-
- PHA03247
Location:739 → 922
- PHA03247; large tegument protein UL36; Provisional
- TIGR02168
Location:196 → 447
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- TIGR04211
Location:400 → 502
- SH3_and_anchor; SH3 domain protein
- pfam00046
Location:1236 → 1290
- Homeobox; Homeobox domain
- pfam02376
Location:1111 → 1184
- CUT; CUT domain
-
XM_030254107.2 → XP_030109967.1 homeobox protein cut-like 1 isoform X4
- UniProtKB/Swiss-Prot
- O08994, P53564, P70301, Q571L6, Q91ZD2
- Conserved Domains (4) summary
-
- PHA03247
Location:819 → 1002
- PHA03247; large tegument protein UL36; Provisional
- TIGR02168
Location:196 → 447
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam00046
Location:1316 → 1370
- Homeobox; Homeobox domain
- pfam02376
Location:1191 → 1264
- CUT; CUT domain