U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    KAR4 Kar4p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 850303, updated on 9-Dec-2024

    Summary

    Official Symbol
    KAR4
    Official Full Name
    Kar4p
    Primary source
    SGD:S000000560
    Locus tag
    YCL055W
    See related
    AllianceGenome:SGD:S000000560; FungiDB:YCL055W; VEuPathDB:YCL055W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables DNA-binding transcription factor activity. Involved in karyogamy involved in conjugation with cellular fusion; meiotic cell cycle; and positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleus. Part of RNA N6-methyladenosine methyltransferase complex. Orthologous to human METTL14 (methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit). [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See KAR4 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_001135.5 (27929..28936)

    Chromosome III - NC_001135.5Genomic Context describing neighboring genes Neighboring gene metalloendopeptidase Neighboring gene Pex34p Neighboring gene Rdt1p Neighboring gene 27S pre-rRNA (guanosine2922-2'-O)-methyltransferase

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables DNA-binding transcription factor activity IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    enables DNA-binding transcription factor activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in karyogamy IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in karyogamy involved in conjugation with cellular fusion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in mRNA modification IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in meiotic cell cycle IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of RNA N6-methyladenosine methyltransferase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of RNA N6-methyladenosine methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of RNA N6-methyladenosine methyltransferase complex IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    part_of RNA N6-methyladenosine methyltransferase complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    located_in cytoplasm HDA PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol HDA PubMed 
    located_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Kar4p
    NP_009876.1
    • Transcription factor required for the mating response; subunit of the mRNA m6A methyltransferase (MIS) complex, regulating meiosis at multiple steps, early prior to pre-meiotic S phase and late during the completion of meiosis and sporulation; exists in two forms, a slower-migrating form abundant during vegetative growth and a faster-migrating pheromone-induced form; null mutant exhibits abnormal lipid metabolic phenotype; homologous to human METTL14, a subunit of a m6A methyltransferase complex

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001135.5 Reference assembly

      Range
      27929..28936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001178699.1NP_009876.1  TPA: Kar4p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_009876.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VQW2, P25583
      UniProtKB/TrEMBL
      A6ZTE0, B3LU30, C7GT09, C8Z436, G2W9X3, N1P630
      Conserved Domains (1) summary
      cl01947
      Location:138293
      MT-A70