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    Vaultrc5 vault RNA component 5 [ Mus musculus (house mouse) ]

    Gene ID: 378472, updated on 23-Dec-2024

    Summary

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    Official Symbol
    Vaultrc5provided by MGI
    Official Full Name
    vault RNA component 5provided by MGI
    Primary source
    MGI:MGI:2673990
    See related
    AllianceGenome:MGI:2673990
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mvg1; Gm22653
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    Genomic context

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    See Vaultrc5 in Genome Data Viewer
    Location:
    18 B2; 18 19.46 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (36934816..36935160)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (36801763..36802107)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8710 Neighboring gene STARR-positive B cell enhancer ABC_E3227 Neighboring gene STARR-positive B cell enhancer ABC_E1207 Neighboring gene STARR-positive B cell enhancer mm9_chr18:36962302-36962603 Neighboring gene STARR-seq mESC enhancer starr_44299 Neighboring gene STARR-seq mESC enhancer starr_44300 Neighboring gene STARR-seq mESC enhancer starr_44301 Neighboring gene histidyl-tRNA synthetase 1 Neighboring gene STARR-seq mESC enhancer starr_44302 Neighboring gene histidyl-tRNA synthetase 2 Neighboring gene STARR-seq mESC enhancer starr_44303 Neighboring gene STARR-seq mESC enhancer starr_44304 Neighboring gene zinc finger, matrin type 2 Neighboring gene STARR-seq mESC enhancer starr_44305 Neighboring gene 3-phosphoglycerate dehydrogenase pseudogene Neighboring gene protocadherin alpha 1 Neighboring gene protocadherin alpha 4B Neighboring gene protocadherin alpha 2 Neighboring gene protocadherin alpha 3 Neighboring gene protocadherin alpha 4 Neighboring gene predicted gene, 38666 Neighboring gene predicted gene, 38667 Neighboring gene protocadherin alpha 5 Neighboring gene predicted gene, 36858 Neighboring gene protocadherin alpha 6 Neighboring gene protocadherin alpha 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The small noncoding RNA Vaultrc5 is dispensable to mouse development. Prajapat M, et al. RNA, 2024 Oct 16. PMID 39209555, Free PMC Article
    2. Identification of conserved vault RNA expression elements and a non-expressed mouse vault RNA gene. Kickhoefer VA, et al. Gene, 2003 May 8. PMID 12758122
    3. Altered Levels of Long NcRNAs Meg3 and Neat1 in Cell And Animal Models Of Huntington's Disease. Chanda K, et al. RNA Biol, 2018. PMID 30321100, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The small noncoding RNA Vaultrc5 is dispensable to mouse development.
      Title: The small noncoding RNA Vaultrc5 is dispensable to mouse development.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027885.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC027740

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      36934816..36935160
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.