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    RPS11B ribosomal 40S subunit protein S11B [ Saccharomyces cerevisiae S288C ]

    Gene ID: 852337, updated on 9-Dec-2024

    Summary

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    Official Symbol
    RPS11B
    Official Full Name
    ribosomal 40S subunit protein S11B
    Primary source
    SGD:S000000252
    Locus tag
    YBR048W
    See related
    AllianceGenome:SGD:S000000252; FungiDB:YBR048W; VEuPathDB:YBR048W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    A structural constituent of ribosome. Involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and ribosomal small subunit assembly. Part of cytosolic small ribosomal subunit. Orthologous to human RPS11 (ribosomal protein S11). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See RPS11B in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_001134.8 (332831..333812)

    Chromosome II - NC_001134.8Genomic Context describing neighboring genes Neighboring gene NADPH:quinone reductase Neighboring gene Fmp23p Neighboring gene DNA-binding protein REB1 Neighboring gene protein phosphatase regulator REG2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001134.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Reduced dosage of genes encoding ribosomal protein S18 suppresses a mitochondrial initiation codon mutation in Saccharomyces cerevisiae. Folley LS, et al. Genetics, 1994 Jun. PMID 8070651, Free PMC Article
    2. Global nucleosome occupancy in yeast. Bernstein BE, et al. Genome Biol, 2004. PMID 15345046, Free PMC Article
    3. A determination of the identity elements in yeast 18 S ribosomal RNA for the recognition of ribosomal protein YS11: the role of the kink-turn motif in helix 11. Dresios J, et al. J Mol Biol, 2005 Jan 28. PMID 15588818
    4. Genetic and biochemical characterization of antisuppressor mutants in the yeast Saccharomyces cerevisiae. Ishiguro J. Curr Genet, 1981 Dec. PMID 24185993
    5. Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription. Morillon A, et al. Mol Cell, 2005 Jun 10. PMID 15949446

    See all (89) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in ribosomal small subunit assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of 90S preribosome HDA PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal 40S subunit protein S11B
    NP_009604.1
    • Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S11 and bacterial S17; RPS11B has a paralog, RPS11A, that arose from the whole genome duplication

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001134.8 Reference assembly

      Range
      332831..333812
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001178396.1 → NP_009604.1  TPA: ribosomal 40S subunit protein S11B [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_009604.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VQ48, O11852, P0CX47, P0CX48, P26781
      UniProtKB/TrEMBL
      A6ZKZ2, B3LGP0, C7GLX2, C8Z4U5, G2W954, N1P4H4
      Conserved Domains (1) summary
      PTZ00241
      Location:4 → 156
      PTZ00241; 40S ribosomal protein S11; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CX47.1
    P0CX48.1

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