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    Rsf1 remodeling and spacing factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 233532, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rsf1provided by MGI
    Official Full Name
    remodeling and spacing factor 1provided by MGI
    Primary source
    MGI:MGI:2682305
    See related
    Ensembl:ENSMUSG00000035623 AllianceGenome:MGI:2682305
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    XAP8; p325; Gm164; Hbxap; 4832420A03Rik; C030033M12Rik
    Summary
    Predicted to enable histone binding activity. Predicted to be involved in several processes, including nucleosome assembly; positive regulation of viral transcription; and regulation of DNA-templated transcription. Predicted to be located in nucleoplasm. Predicted to be part of RSF complex. Is expressed in several structures, including ear; genitourinary system; and nervous system. Orthologous to human RSF1 (remodeling and spacing factor 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in CNS E11.5 (RPKM 4.7), CNS E14 (RPKM 4.1) and 24 other tissues See more
    Orthologs
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    Genomic context

    See Rsf1 in Genome Data Viewer
    Location:
    7 E1; 7 53.55 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (97229103..97341989)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (97579870..97692782)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 4 Neighboring gene predicted gene, 24412 Neighboring gene adipogenesis associated Mth938 domain containing Neighboring gene STARR-seq mESC enhancer starr_19602 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 1 Neighboring gene ribosomal protein L15, pseudogene 5 Neighboring gene remodeling and spacing factor 1, opposite strand 1 Neighboring gene STARR-positive B cell enhancer mm9_chr7:104787388-104787688 Neighboring gene STARR-seq mESC enhancer starr_19603 Neighboring gene remodeling and spacing factor 1, opposite strand 2 Neighboring gene STARR-positive B cell enhancer ABC_E11361 Neighboring gene chloride channel, nucleotide-sensitive, 1A Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:104870902-104871089 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:104872316-104872580 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:104879154-104879355 Neighboring gene aquaporin 11

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (3)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC90806

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables histone binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of RSF complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of RSF complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    remodeling and spacing factor 1
    Names
    hepatitis B virus x associated protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081267.2NP_001074736.1  remodeling and spacing factor 1

      Status: VALIDATED

      Source sequence(s)
      AC124541, AC149605, AC151477
      Consensus CDS
      CCDS40025.1
      UniProtKB/TrEMBL
      E9PWW9
      Related
      ENSMUSP00000102771.3, ENSMUST00000107153.3
      Conserved Domains (4) summary
      cd15543
      Location:896941
      PHD_RSF1; PHD finger found in Remodeling and spacing factor 1 (Rsf-1)
      pfam15612
      Location:103153
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:155187
      WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2
      cl02608
      Location:918971
      BAH; BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      97229103..97341989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)