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    Vom1r78 vomeronasal 1 receptor 78 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 494273, updated on 9-Dec-2024

    Summary

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    Symbol
    Vom1r78provided by RGD
    Full Name
    vomeronasal 1 receptor 78provided by RGD
    Primary source
    RGD:1549704
    See related
    EnsemblRapid:ENSRNOG00000088568 AllianceGenome:RGD:1549704
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    V1rc36
    Summary
    Predicted to enable pheromone receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in plasma membrane. Orthologous to human VN1R5 (vomeronasal 1 receptor 5 (gene/pseudogene)). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Vom1r78 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (88202212..88203129)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (86872049..86872966)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (87943152..87944069)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S6-like Neighboring gene 40S ribosomal protein S6 pseudogene Neighboring gene vomeronasal 1 receptor 79 Neighboring gene vomeronasal 1 receptor 80

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables pheromone receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to pheromone IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in sensory perception of chemical stimulus IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    vomeronasal 1 receptor 78; vomeronasal type-1 receptor 90
    Names
    vomernasal 1 receptor Vom1r78
    vomeronasal 1 receptor, C36
    vomeronasal V1r-type receptor V1rc36

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      88202212..88203129
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039109062.1 → XP_038964990.1  vomeronasal type-1 receptor 90

      UniProtKB/TrEMBL
      A0A8I6GME1
      Related
      ENSRNOP00000106036.1, ENSRNOT00000141857.1
      Conserved Domains (2) summary
      cd14964
      Location:5 → 28
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:5 → 294
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001008924.1: Suppressed sequence

      Description
      NM_001008924.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
    Nucleotide Protein Strain
    Heading Accession and Version

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