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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_027413.1 → NP_081689.1 leucine-rich repeat-containing protein 28 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks several 3' exons but has an alternate 3' exon, as compared to variant 1. The resulting isoform (2) is shorter and has a different C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AI663251, AK008713, AK050154
- Consensus CDS
-
CCDS52269.1
- UniProtKB/TrEMBL
- Q8BWS3, Q9D7Y1
- Related
- ENSMUSP00000032775.6, ENSMUST00000032775.12
- Conserved Domains (2) summary
-
- sd00033
Location:20 → 42
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:65 → 123
- LRR_8; Leucine rich repeat
-
NM_175124.5 → NP_780333.3 leucine-rich repeat-containing protein 28 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) is the longest transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AI663251, BC086694
- Consensus CDS
-
CCDS21351.1
- UniProtKB/Swiss-Prot
- Q0VGR7, Q3TX51, Q8BK43
- Related
- ENSMUSP00000052177.3, ENSMUST00000053950.10
- Conserved Domains (2) summary
-
- sd00033
Location:43 → 66
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:65 → 123
- LRR_8; Leucine rich repeat
RNA
-
NR_028143.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an internal segment, as compared to variant 1. The transcript is a nonsense-mediated mRNA decay candidate, so is unlikely to make a functional protein.
- Source sequence(s)
-
AI663251, AK004904, BC086694
-
NR_028144.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an exon in the 5' region, as compared to variant 1. The transcript is a nonsense-mediated mRNA decay candidate, so is unlikely to make a functional protein.
- Source sequence(s)
-
AI663251, BC052051, BC086694
- Related
-
ENSMUST00000187953.8
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000073.7 Reference GRCm39 C57BL/6J
- Range
-
67163158..67295084 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006541130.4 → XP_006541193.1 leucine-rich repeat-containing protein 28 isoform X3
- Conserved Domains (3) summary
-
- PRK15370
Location:41 → 281
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- COG4886
Location:34 → 157
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- sd00033
Location:43 → 66
- LRR_RI; leucine-rich repeat [structural motif]
-
XM_036153393.1 → XP_036009286.1 leucine-rich repeat-containing protein 28 isoform X2
- Conserved Domains (2) summary
-
- PRK15370
Location:8 → 290
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- sd00033
Location:43 → 66
- LRR_RI; leucine-rich repeat [structural motif]
-
XM_036153392.1 → XP_036009285.1 leucine-rich repeat-containing protein 28 isoform X1
- Conserved Domains (3) summary
-
- PRK15370
Location:8 → 232
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- PRK15387
Location:132 → 359
- PRK15387; type III secretion system effector E3 ubiquitin transferase SspH2
- sd00033
Location:43 → 66
- LRR_RI; leucine-rich repeat [structural motif]
-
XM_006541133.2 → XP_006541196.2 leucine-rich repeat-containing protein 28 isoform X4
- UniProtKB/TrEMBL
-
Q8BVY5
- Conserved Domains (2) summary
-
- PRK15370
Location:24 → 194
- PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
- sd00031
Location:24 → 46
- LRR_1; leucine-rich repeat [structural motif]
RNA
-
XR_391360.4 RNA Sequence
-
XR_004934174.1 RNA Sequence
-
XR_004934173.1 RNA Sequence
-
XR_004934175.1 RNA Sequence