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    5730405O15Rik RIKEN cDNA 5730405O15 gene [ Mus musculus (house mouse) ]

    Gene ID: 70489, updated on 6-Oct-2024

    Summary

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    Official Symbol
    5730405O15Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 5730405O15 geneprovided by MGI
    Primary source
    MGI:MGI:1917739
    See related
    Ensembl:ENSMUSG00000087424 AllianceGenome:MGI:1917739
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in genital fat pad adult (RPKM 1.3), bladder adult (RPKM 1.1) and 28 other tissues See more
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    Genomic context

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    See 5730405O15Rik in Genome Data Viewer
    Location:
    X A1.1; X 7.92 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (12908254..12911534)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (13042015..13045295)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A pseudogene x_132.1 Neighboring gene RIKEN cDNA 4930500G05 gene Neighboring gene predicted gene, 41890 Neighboring gene STARR-seq mESC enhancer starr_46774 Neighboring gene STARR-seq mESC enhancer starr_46778 Neighboring gene STARR-seq mESC enhancer starr_46779 Neighboring gene STARR-seq mESC enhancer starr_46781 Neighboring gene STARR-positive B cell enhancer mm9_chrX:12648426-12648727 Neighboring gene ubiquitin specific peptidase 9, X chromosome Neighboring gene ribosomal protein L3, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    2. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038158.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK017500, AK134096
      Related
      ENSMUST00000130099.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      12908254..12911534
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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