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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008439.2 RefSeqGene
- Range
-
7023..16971
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001129727.3 → NP_001123199.1 puratrophin-1 isoform 1
See identical proteins and their annotated locations for NP_001123199.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) represents the longest transcript and encodes the longer isoform (1). Variants 2, 3, and 4 encode isoform 1.
- Source sequence(s)
-
AK024475, BC054486, DB279205
- Consensus CDS
-
CCDS32466.1
- UniProtKB/Swiss-Prot
- Q4G0J8, Q4H485, Q56A69, Q58EX7, Q9H7K4, Q9UFW0
- UniProtKB/TrEMBL
- A0A024R6X4, B4E3H4
- Conserved Domains (3) summary
-
- cd13242
Location:899 → 1034
- PH_puratrophin-1; Puratrophin-1 pleckstrin homology (PH) domain
- pfam00621
Location:736 → 906
- RhoGEF; RhoGEF domain
- cl02488
Location:447 → 598
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
-
NM_001129728.2 → NP_001123200.1 puratrophin-1 isoform 1
See identical proteins and their annotated locations for NP_001123200.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 2. Variants 2, 3, and 4 encode isoform 1.
- Source sequence(s)
-
AB197663, AK308298, DB061030
- Consensus CDS
-
CCDS32466.1
- UniProtKB/Swiss-Prot
- Q4G0J8, Q4H485, Q56A69, Q58EX7, Q9H7K4, Q9UFW0
- UniProtKB/TrEMBL
- A0A024R6X4, B4E3H4
- Related
- ENSP00000401118.2, ENST00000427155.6
- Conserved Domains (3) summary
-
- cd13242
Location:899 → 1034
- PH_puratrophin-1; Puratrophin-1 pleckstrin homology (PH) domain
- pfam00621
Location:736 → 906
- RhoGEF; RhoGEF domain
- cl02488
Location:447 → 598
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
-
NM_001129729.3 → NP_001123201.1 puratrophin-1 isoform 1
See identical proteins and their annotated locations for NP_001123201.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 2. Variants 2, 3, and 4 encode isoform 1.
- Source sequence(s)
-
BC054486, BC063501, DB461411
- Consensus CDS
-
CCDS32466.1
- UniProtKB/Swiss-Prot
- Q4G0J8, Q4H485, Q56A69, Q58EX7, Q9H7K4, Q9UFW0
- UniProtKB/TrEMBL
- A0A024R6X4, B4E3H4
- Related
- ENSP00000368649.3, ENST00000379344.8
- Conserved Domains (3) summary
-
- cd13242
Location:899 → 1034
- PH_puratrophin-1; Puratrophin-1 pleckstrin homology (PH) domain
- pfam00621
Location:736 → 906
- RhoGEF; RhoGEF domain
- cl02488
Location:447 → 598
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
-
NM_001129731.3 → NP_001123203.1 puratrophin-1 isoform 2
See identical proteins and their annotated locations for NP_001123203.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and uses an alternate splice site and lacks an exon in the 5' coding region, but maintains the reading frame, compared to variant 2. The encoded isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AB197663, BC054486, CF993821
- Consensus CDS
-
CCDS45512.1
- UniProtKB/TrEMBL
-
B4E3H4
- Related
- ENSP00000398030.1, ENST00000450733.5
- Conserved Domains (4) summary
-
- cd13242
Location:818 → 953
- PH_puratrophin-1; Puratrophin-1 pleckstrin homology (PH) domain
- pfam00169
Location:843 → 945
- PH; PH domain
- pfam00621
Location:655 → 826
- RhoGEF; RhoGEF domain
- cl02488
Location:366 → 517
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10 Reference GRCh38.p14 Primary Assembly
- Range
-
67277580..67289480
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011522987.3 → XP_011521289.1 puratrophin-1 isoform X1
See identical proteins and their annotated locations for XP_011521289.1
- UniProtKB/Swiss-Prot
- Q4G0J8, Q4H485, Q56A69, Q58EX7, Q9H7K4, Q9UFW0
- UniProtKB/TrEMBL
- A0A024R6X4, B4E3H4
- Conserved Domains (3) summary
-
- cd13242
Location:899 → 1034
- PH_puratrophin-1; Puratrophin-1 pleckstrin homology (PH) domain
- pfam00621
Location:736 → 906
- RhoGEF; RhoGEF domain
- cl02488
Location:447 → 598
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
-
XM_011522988.3 → XP_011521290.1 puratrophin-1 isoform X1
See identical proteins and their annotated locations for XP_011521290.1
- UniProtKB/Swiss-Prot
- Q4G0J8, Q4H485, Q56A69, Q58EX7, Q9H7K4, Q9UFW0
- UniProtKB/TrEMBL
- A0A024R6X4, B4E3H4
- Conserved Domains (3) summary
-
- cd13242
Location:899 → 1034
- PH_puratrophin-1; Puratrophin-1 pleckstrin homology (PH) domain
- pfam00621
Location:736 → 906
- RhoGEF; RhoGEF domain
- cl02488
Location:447 → 598
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
-
XM_047433897.1 → XP_047289853.1 puratrophin-1 isoform X2
- UniProtKB/TrEMBL
-
B4E3H4
-
XM_047433899.1 → XP_047289855.1 puratrophin-1 isoform X4
- UniProtKB/TrEMBL
-
B4E3H4
-
XM_047433895.1 → XP_047289851.1 puratrophin-1 isoform X2
- UniProtKB/TrEMBL
-
B4E3H4
-
XM_047433893.1 → XP_047289849.1 puratrophin-1 isoform X2
- UniProtKB/TrEMBL
-
B4E3H4
-
XM_011522986.3 → XP_011521288.1 puratrophin-1 isoform X1
See identical proteins and their annotated locations for XP_011521288.1
- UniProtKB/Swiss-Prot
- Q4G0J8, Q4H485, Q56A69, Q58EX7, Q9H7K4, Q9UFW0
- UniProtKB/TrEMBL
- A0A024R6X4, B4E3H4
- Related
- ENSP00000353646.5, ENST00000360461.9
- Conserved Domains (3) summary
-
- cd13242
Location:899 → 1034
- PH_puratrophin-1; Puratrophin-1 pleckstrin homology (PH) domain
- pfam00621
Location:736 → 906
- RhoGEF; RhoGEF domain
- cl02488
Location:447 → 598
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
-
XM_047433896.1 → XP_047289852.1 puratrophin-1 isoform X2
- UniProtKB/TrEMBL
-
B4E3H4
-
XM_011522985.3 → XP_011521287.1 puratrophin-1 isoform X1
See identical proteins and their annotated locations for XP_011521287.1
- UniProtKB/Swiss-Prot
- Q4G0J8, Q4H485, Q56A69, Q58EX7, Q9H7K4, Q9UFW0
- UniProtKB/TrEMBL
- A0A024R6X4, B4E3H4
- Conserved Domains (3) summary
-
- cd13242
Location:899 → 1034
- PH_puratrophin-1; Puratrophin-1 pleckstrin homology (PH) domain
- pfam00621
Location:736 → 906
- RhoGEF; RhoGEF domain
- cl02488
Location:447 → 598
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
-
XM_047433894.1 → XP_047289850.1 puratrophin-1 isoform X2
- UniProtKB/TrEMBL
-
B4E3H4
-
XM_047433898.1 → XP_047289854.1 puratrophin-1 isoform X3
- UniProtKB/TrEMBL
-
B4E3H4
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1 Alternate T2T-CHM13v2.0
- Range
-
73071877..73083777
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054380009.1 → XP_054235984.1 puratrophin-1 isoform X1
- UniProtKB/Swiss-Prot
- Q4G0J8, Q4H485, Q56A69, Q58EX7, Q9H7K4, Q9UFW0
- UniProtKB/TrEMBL
- A0A024R6X4, B4E3H4
-
XM_054380007.1 → XP_054235982.1 puratrophin-1 isoform X1
- UniProtKB/Swiss-Prot
- Q4G0J8, Q4H485, Q56A69, Q58EX7, Q9H7K4, Q9UFW0
- UniProtKB/TrEMBL
- A0A024R6X4, B4E3H4
-
XM_054380013.1 → XP_054235988.1 puratrophin-1 isoform X2
- UniProtKB/TrEMBL
-
B4E3H4
-
XM_054380015.1 → XP_054235990.1 puratrophin-1 isoform X4
- UniProtKB/TrEMBL
-
B4E3H4
-
XM_054380011.1 → XP_054235986.1 puratrophin-1 isoform X2
- UniProtKB/TrEMBL
-
B4E3H4
-
XM_054380006.1 → XP_054235981.1 puratrophin-1 isoform X1
- UniProtKB/Swiss-Prot
- Q4G0J8, Q4H485, Q56A69, Q58EX7, Q9H7K4, Q9UFW0
- UniProtKB/TrEMBL
- A0A024R6X4, B4E3H4
-
XM_054380008.1 → XP_054235983.1 puratrophin-1 isoform X1
- UniProtKB/Swiss-Prot
- Q4G0J8, Q4H485, Q56A69, Q58EX7, Q9H7K4, Q9UFW0
- UniProtKB/TrEMBL
- A0A024R6X4, B4E3H4
-
XM_054380010.1 → XP_054235985.1 puratrophin-1 isoform X2
- UniProtKB/TrEMBL
-
B4E3H4
-
XM_054380012.1 → XP_054235987.1 puratrophin-1 isoform X2
- UniProtKB/TrEMBL
-
B4E3H4
-
XM_054380014.1 → XP_054235989.1 puratrophin-1 isoform X3
- UniProtKB/TrEMBL
-
B4E3H4
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_015432.3: Suppressed sequence
- Description
- NM_015432.3: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.