U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Lce6a late cornified envelope 6A [ Mus musculus (house mouse) ]

    Gene ID: 78382, updated on 9-Dec-2024

    Summary

    Official Symbol
    Lce6aprovided by MGI
    Official Full Name
    late cornified envelope 6Aprovided by MGI
    Primary source
    MGI:MGI:1925632
    See related
    Ensembl:ENSMUSG00000086848 AllianceGenome:MGI:1925632
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2210420J11Rik
    Summary
    Orthologous to human LCE6A (late cornified envelope 6A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in stomach adult (RPKM 1.4), testis adult (RPKM 0.5) and 4 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Lce6a in Genome Data Viewer
    Location:
    3 F1; 3 40.14 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92512128..92528975, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92604821..92621660, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35639 Neighboring gene involucrin Neighboring gene sperm mitochondria-associated cysteine-rich protein Neighboring gene predicted gene, 35699 Neighboring gene late cornified envelope 1A1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    late cornified envelope protein 6A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001166172.2NP_001159644.1  late cornified envelope protein 6A

      See identical proteins and their annotated locations for NP_001159644.1

      Status: VALIDATED

      Source sequence(s)
      AC132234
      Consensus CDS
      CCDS50976.1
      UniProtKB/TrEMBL
      D3YV94
      Related
      ENSMUSP00000114595.2, ENSMUST00000138403.2
      Conserved Domains (1) summary
      pfam15858
      Location:181
      LCE6A; Late cornified envelope protein 6A family
    2. NM_001399689.1NP_001386618.1  late cornified envelope protein 6A

      Status: VALIDATED

      Source sequence(s)
      AC132234
      UniProtKB/TrEMBL
      D3YV94
      Related
      ENSMUSP00000128725.3, ENSMUST00000170676.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      92512128..92528975 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006502319.3XP_006502382.1  late cornified envelope protein 6A isoform X1

      See identical proteins and their annotated locations for XP_006502382.1

      UniProtKB/TrEMBL
      D3YV94
      Conserved Domains (1) summary
      pfam15858
      Location:181
      LCE6A; Late cornified envelope protein 6A family
    2. XM_006502320.2XP_006502383.1  late cornified envelope protein 6A isoform X1

      See identical proteins and their annotated locations for XP_006502383.1

      UniProtKB/TrEMBL
      D3YV94
      Conserved Domains (1) summary
      pfam15858
      Location:181
      LCE6A; Late cornified envelope protein 6A family