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    Lypd5 Ly6/Plaur domain containing 5 [ Mus musculus (house mouse) ]

    Gene ID: 76942, updated on 9-Dec-2024

    Summary

    Official Symbol
    Lypd5provided by MGI
    Official Full Name
    Ly6/Plaur domain containing 5provided by MGI
    Primary source
    MGI:MGI:1924192
    See related
    Ensembl:ENSMUSG00000030484 AllianceGenome:MGI:1924192
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2210003I03Rik; 2310011E23Rik
    Summary
    Predicted to be located in side of membrane. Predicted to be active in plasma membrane. Orthologous to human LYPD5 (LY6/PLAUR domain containing 5). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward stomach adult (RPKM 98.3) See more
    Orthologs
    NEW
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    Genomic context

    See Lypd5 in Genome Data Viewer
    Location:
    7 A3; 7 10.27 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (24048621..24053672)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (24349196..24354247)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 930 pseudogene Neighboring gene tescalcin-like Neighboring gene predicted gene, 38964 Neighboring gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:25164989-25165185

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (1)  1 citation

    General protein information

    Preferred Names
    ly6/PLAUR domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029806.2NP_084082.1  ly6/PLAUR domain-containing protein 5 precursor

      See identical proteins and their annotated locations for NP_084082.1

      Status: VALIDATED

      Source sequence(s)
      AC159140, BC107187
      Consensus CDS
      CCDS39830.1
      UniProtKB/Swiss-Prot
      Q0VDW0, Q9D7Z7
      Related
      ENSMUSP00000032683.5, ENSMUST00000032683.6
      Conserved Domains (1) summary
      pfam00021
      Location:133212
      UPAR_LY6; u-PAR/Ly-6 domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      24048621..24053672
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)