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    Tex38 testis expressed 38 [ Mus musculus (house mouse) ]

    Gene ID: 75173, updated on 13-Jan-2025

    Summary

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    Official Symbol
    Tex38provided by MGI
    Official Full Name
    testis expressed 38provided by MGI
    Primary source
    MGI:MGI:1922423
    See related
    Ensembl:ENSMUSG00000044556 AllianceGenome:MGI:1922423
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Theg4; 4930544O15Rik
    Summary
    Predicted to be located in membrane. Is expressed in lung. Orthologous to human TEX38 (testis expressed 38). [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Biased expression in testis adult (RPKM 11.4) and CNS E11.5 (RPKM 0.2) See more
    Orthologs
    human all
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    Genomic context

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    See Tex38 in Genome Data Viewer
    Location:
    4 D1; 4 53.06 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (115633178..115639925, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (115779831..115783001, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 4, subfamily b, polypeptide 1 Neighboring gene eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) pseudogene Neighboring gene EF-hand calcium binding domain 14 Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 1 Neighboring gene STARR-seq mESC enhancer starr_11125 Neighboring gene MOB kinase activator 3C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
    2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    testis-expressed protein 38
    Names
    ATPAF1 antisense RNA 1
    ATPAF1 antisense gene protein 1
    testis highly expressed protein 4
    testis-expressed sequence 38 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029196.1 → NP_083472.1  testis-expressed protein 38

      Status: VALIDATED

      Source sequence(s)
      AK016041, CF982527
      Consensus CDS
      CCDS51274.1
      UniProtKB/Swiss-Prot
      A2A8T7, Q9D4X3
      UniProtKB/TrEMBL
      D2D552
      Related
      ENSMUSP00000102131.2, ENSMUST00000106521.2
      Conserved Domains (1) summary
      pfam15834
      Location:1 → 200
      THEG4; Testis highly expressed protein 4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      115633178..115639925 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011240627.4 → XP_011238929.1  testis-expressed protein 38 isoform X1

      Conserved Domains (1) summary
      pfam15834
      Location:1 → 158
      THEG4; Testis highly expressed protein 4

    2. XM_011240626.3 → XP_011238928.1  testis-expressed protein 38 isoform X1

      Conserved Domains (1) summary
      pfam15834
      Location:1 → 158
      THEG4; Testis highly expressed protein 4
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2A8T7.1 GenPept UniProtKB/Swiss-Prot:A2A8T7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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