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    RPL13AP3 ribosomal protein L13a pseudogene 3 [ Homo sapiens (human) ]

    Gene ID: 645683, updated on 10-Dec-2024

    Summary

    Official Symbol
    RPL13AP3provided by HGNC
    Official Full Name
    ribosomal protein L13a pseudogene 3provided by HGNC
    Primary source
    HGNC:HGNC:23539
    See related
    Ensembl:ENSG00000293056 AllianceGenome:HGNC:23539
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RPL13A_11_1370
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See RPL13AP3 in Genome Data Viewer
    Location:
    14q22.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (55766161..55767717)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (49971925..49973481)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (56232879..56234435)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5786 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5785 Neighboring gene Sharpr-MPRA regulatory region 13870 Neighboring gene kinectin 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:56166391-56166991 Neighboring gene uncharacterized LOC124903320 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:56219189-56219804 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:56220358-56220908 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:56219806-56220357 Neighboring gene long intergenic non-protein coding RNA 520 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:56270173-56271372 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:56280398-56281597 Neighboring gene Sharpr-MPRA regulatory region 10894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:56328264-56328764 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:56332166-56332666 Neighboring gene uncharacterized LOC105370511

    Genomic regions, transcripts, and products

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC87657

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_004844.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL355773
      Related
      ENST00000494676.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      55766161..55767717
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      49971925..49973481
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)