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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_047144.1 RefSeqGene
- Range
-
89890..401083
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001289080.2 → NP_001276009.1 contactin-6 isoform 1 precursor
See identical proteins and their annotated locations for NP_001276009.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2, and 4-9 all encode the same isoform (1).
- Source sequence(s)
-
AB003592, AC026214, AC034192, BC113118, CN364480, DB170583
- Consensus CDS
-
CCDS2557.1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
- Related
- ENSP00000407822.2, ENST00000446702.7
- Conserved Domains (2) summary
-
- cd00063
Location:598 → 691
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:319 → 403
- Ig; Immunoglobulin domain
-
NM_001289081.2 → NP_001276010.1 contactin-6 isoform 2
See identical proteins and their annotated locations for NP_001276010.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at a downstream start codon, compared to variant 1. It encodes isoform 2, which has a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC026214, AC034192, AK294786, BC113118, CN364480, DA094373
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (5) summary
-
- cd04969
Location:352 → 424
- Ig5_Contactin_like; Fifth Ig domain of contactin
- smart00410
Location:434 → 522
- IG_like; Immunoglobulin like
- cd00063
Location:526 → 619
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:336 → 424
- I-set; Immunoglobulin I-set domain
- cl11960
Location:247 → 331
- Ig; Immunoglobulin domain
-
NM_001349350.2 → NP_001336279.1 contactin-6 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (4), as well as variants 1, 2, and 5-9, encodes isoform 1.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- Consensus CDS
-
CCDS2557.1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (2) summary
-
- cd00063
Location:598 → 691
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:319 → 403
- Ig; Immunoglobulin domain
-
NM_001349351.2 → NP_001336280.1 contactin-6 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (5), as well as variants 1, 2, 4, and 6-9, encodes isoform 1.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- Consensus CDS
-
CCDS2557.1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (2) summary
-
- cd00063
Location:598 → 691
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:319 → 403
- Ig; Immunoglobulin domain
-
NM_001349352.2 → NP_001336281.1 contactin-6 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (6), as well as variants 1, 2, 4, 5, and 7-9, encodes isoform 1.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- Consensus CDS
-
CCDS2557.1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (2) summary
-
- cd00063
Location:598 → 691
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:319 → 403
- Ig; Immunoglobulin domain
-
NM_001349353.2 → NP_001336282.1 contactin-6 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (7), as well as variants 1, 2, 4-6, 8 and 9, encodes isoform 1.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- Consensus CDS
-
CCDS2557.1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (2) summary
-
- cd00063
Location:598 → 691
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:319 → 403
- Ig; Immunoglobulin domain
-
NM_001349354.2 → NP_001336283.1 contactin-6 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (8), as well as variants 1, 2, 4-7, and 9, encodes isoform 1.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- Consensus CDS
-
CCDS2557.1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (2) summary
-
- cd00063
Location:598 → 691
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:319 → 403
- Ig; Immunoglobulin domain
-
NM_001349355.2 → NP_001336284.1 contactin-6 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (9), as well as variants 1, 2, and 4-8, encodes isoform 1.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- Consensus CDS
-
CCDS2557.1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (2) summary
-
- cd00063
Location:598 → 691
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:319 → 403
- Ig; Immunoglobulin domain
-
NM_001349356.2 → NP_001336285.1 contactin-6 isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (10) encodes isoform 3.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (2) summary
-
- cd00063
Location:562 → 655
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:283 → 367
- Ig; Immunoglobulin domain
-
NM_001349357.2 → NP_001336286.1 contactin-6 isoform 4 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (11) encodes isoform 4.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (2) summary
-
- cd00063
Location:494 → 587
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:215 → 299
- Ig; Immunoglobulin domain
-
NM_001349358.2 → NP_001336287.1 contactin-6 isoform 5 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (12) encodes isoform 5.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (3) summary
-
- smart00060
Location:718 → 798
- FN3; Fibronectin type 3 domain
- cd00063
Location:413 → 506
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:330 → 413
- Ig; Immunoglobulin domain
-
NM_001349359.2 → NP_001336288.1 contactin-6 isoform 6
Status: REVIEWED
- Description
- Transcript Variant: This variant (13), as well as variants 14-16, encodes isoform 6.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- Conserved Domains (3) summary
-
- smart00060
Location:529 → 609
- FN3; Fibronectin type 3 domain
- cd00063
Location:224 → 317
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:141 → 224
- Ig; Immunoglobulin domain
-
NM_001349360.2 → NP_001336289.1 contactin-6 isoform 6
Status: REVIEWED
- Description
- Transcript Variant: This variant (14), as well as variants 13, 15, and 16, encodes isoform 6.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- Conserved Domains (3) summary
-
- smart00060
Location:529 → 609
- FN3; Fibronectin type 3 domain
- cd00063
Location:224 → 317
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:141 → 224
- Ig; Immunoglobulin domain
-
NM_001349361.2 → NP_001336290.1 contactin-6 isoform 6
Status: REVIEWED
- Description
- Transcript Variant: This variant (15), as well as variants 13, 14, and 16, encodes isoform 6.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- Conserved Domains (3) summary
-
- smart00060
Location:529 → 609
- FN3; Fibronectin type 3 domain
- cd00063
Location:224 → 317
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:141 → 224
- Ig; Immunoglobulin domain
-
NM_001349362.2 → NP_001336291.1 contactin-6 isoform 6
Status: REVIEWED
- Description
- Transcript Variant: This variant (16), as well as variants 13-15, encodes isoform 6.
- Source sequence(s)
-
AC026214, AC027123, AC034192
- Conserved Domains (3) summary
-
- smart00060
Location:529 → 609
- FN3; Fibronectin type 3 domain
- cd00063
Location:224 → 317
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:141 → 224
- Ig; Immunoglobulin domain
-
NM_014461.4 → NP_055276.1 contactin-6 isoform 1 precursor
See identical proteins and their annotated locations for NP_055276.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1, 2, and 4-9 all encode the same isoform (1).
- Source sequence(s)
-
AB003592, AC026214, AC034192, BC036338, CN364480
- Consensus CDS
-
CCDS2557.1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
- Related
- ENSP00000341882.2, ENST00000350110.2
- Conserved Domains (2) summary
-
- cd00063
Location:598 → 691
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:319 → 403
- Ig; Immunoglobulin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
1093024..1404217
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011533590.3 → XP_011531892.1 contactin-6 isoform X1
See identical proteins and their annotated locations for XP_011531892.1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (2) summary
-
- cd00063
Location:598 → 691
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:319 → 403
- Ig; Immunoglobulin domain
-
XM_047447972.1 → XP_047303928.1 contactin-6 isoform X1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
-
XM_047447974.1 → XP_047303930.1 contactin-6 isoform X4
-
XM_017006177.3 → XP_016861666.1 contactin-6 isoform X3
-
XM_017006172.3 → XP_016861661.1 contactin-6 isoform X1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (2) summary
-
- cd00063
Location:598 → 691
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cl11960
Location:319 → 403
- Ig; Immunoglobulin domain
-
XM_011533591.4 → XP_011531893.1 contactin-6 isoform X2
See identical proteins and their annotated locations for XP_011531893.1
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (5) summary
-
- cd04969
Location:352 → 424
- Ig5_Contactin_like; Fifth Ig domain of contactin
- smart00410
Location:434 → 522
- IG_like; Immunoglobulin like
- cd00063
Location:526 → 619
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:336 → 424
- I-set; Immunoglobulin I-set domain
- cl11960
Location:247 → 331
- Ig; Immunoglobulin domain
-
XM_017006174.2 → XP_016861663.1 contactin-6 isoform X2
- UniProtKB/TrEMBL
-
B4DGV0
- Conserved Domains (5) summary
-
- cd04969
Location:352 → 424
- Ig5_Contactin_like; Fifth Ig domain of contactin
- smart00410
Location:434 → 522
- IG_like; Immunoglobulin like
- cd00063
Location:526 → 619
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:336 → 424
- I-set; Immunoglobulin I-set domain
- cl11960
Location:247 → 331
- Ig; Immunoglobulin domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
870677..1398549
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054346182.1 → XP_054202157.1 contactin-6 isoform X1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
-
XM_054346183.1 → XP_054202158.1 contactin-6 isoform X1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
-
XM_054346188.1 → XP_054202163.1 contactin-6 isoform X4
-
XM_054346187.1 → XP_054202162.1 contactin-6 isoform X3
-
XM_054346184.1 → XP_054202159.1 contactin-6 isoform X1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
-
XM_054346181.1 → XP_054202156.1 contactin-6 isoform X1
- UniProtKB/Swiss-Prot
- Q2KHM2, Q9UQ52
- UniProtKB/TrEMBL
-
B4DGV0
-
XM_054346186.1 → XP_054202161.1 contactin-6 isoform X2
- UniProtKB/TrEMBL
-
B4DGV0
-
XM_054346185.1 → XP_054202160.1 contactin-6 isoform X2
- UniProtKB/TrEMBL
-
B4DGV0