Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Cdrt4 CMT1A duplicated region transcript 4 [ Mus musculus (house mouse) ]

    Gene ID: 66338, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cdrt4provided by MGI
    Official Full Name
    CMT1A duplicated region transcript 4provided by MGI
    Primary source
    MGI:MGI:1913588
    See related
    Ensembl:ENSMUSG00000042200 AllianceGenome:MGI:1913588
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700019I23Rik
    Summary
    Orthologous to human CDRT4 (CMT1A duplicated region transcript 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 122.0) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Cdrt4 in Genome Data Viewer
    Location:
    11 B2- B3; 11 38.84 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (62842019..62883921)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (62951193..62993095)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36614 Neighboring gene CMT1A duplicated region transcript 4, opposite strand 2 Neighboring gene VISTA enhancer mm1530 Neighboring gene VISTA enhancer mm62 Neighboring gene CMT1A duplicated region transcript 4, opposite strand 1 Neighboring gene predicted gene, 46284 Neighboring gene predicted gene, 36874

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    CMT1A duplicated region transcript 4 protein homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025496.1NP_079772.1  CMT1A duplicated region transcript 4 protein homolog

      See identical proteins and their annotated locations for NP_079772.1

      Status: PROVISIONAL

      Source sequence(s)
      AK006125
      Consensus CDS
      CCDS24835.1
      UniProtKB/Swiss-Prot
      Q9D9Y3, Q9DA64
      Related
      ENSMUSP00000048844.4, ENSMUST00000035854.4
      Conserved Domains (1) summary
      pfam15213
      Location:32164
      CDRT4; CMT1A duplicated region transcript 4 protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      62842019..62883921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)