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    ZNF516-DT ZNF516 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 400658, updated on 10-Dec-2024

    Summary

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    Official Symbol
    ZNF516-DTprovided by HGNC
    Official Full Name
    ZNF516 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:51248
    See related
    Ensembl:ENSG00000275763 AllianceGenome:HGNC:51248
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C18orf65
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See ZNF516-DT in Genome Data Viewer
    Location:
    18q23
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (76495339..76498089)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (76724017..76726767)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (74207295..74210046)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372211 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74073833-74074334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74074335-74074834 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74083239-74083841 Neighboring gene zinc finger protein 516 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74102627-74103144 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74116826-74117662 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9550 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13507 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9551 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74123937-74124497 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:74135201-74135702 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_50380 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74158633-74159211 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74158054-74158632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74159212-74159789 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74160675-74161176 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74161177-74161676 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9552 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9553 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74169047-74169548 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74169549-74170048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74171461-74172058 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74172059-74172656 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:74188803-74190002 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74191127-74191698 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74191699-74192269 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9554 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13508 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13509 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9555 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9557 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9556 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13510 Neighboring gene ZNF516 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 8201 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74240354-74240994 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74240995-74241633 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74241634-74242273 Neighboring gene long intergenic non-protein coding RNA 908 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74323725-74324238 Neighboring gene long intergenic non-protein coding RNA 683 Neighboring gene long intergenic non-protein coding RNA 1927

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Homology

    Clone Names

    • FLJ44313

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_164145.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC018413, AMYH02035015
      Related
      ENST00000622985.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      76495339..76498089
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      76724017..76726767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_207460.1: Suppressed sequence

      Description
      NM_207460.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ZTR6.1 GenPept UniProtKB/Swiss-Prot:Q6ZTR6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials