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    PF3D7_1111000 tRNA m5C-methyltransferase, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 810665, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1111000
    Gene description
    tRNA m5C-methyltransferase, putative
    Locus tag
    PF3D7_1111000
    See related
    PlasmoDB:PF3D7_1111000; VEuPathDB:PF3D7_1111000
    Gene type
    protein coding
    RNA name
    tRNA m5C-methyltransferase, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1111000 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    1
    Sequence:
    Chromosome: 11; NC_037282.1 (434802..436541)

    Chromosome 11 - NC_037282.1Genomic Context describing neighboring genes Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene ES2 protein, putative Neighboring gene replication factor C subunit 5, putative Neighboring gene conserved protein, unknown function

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037282.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. 5-methylcytosine modification by Plasmodium NSUN2 stabilizes mRNA and mediates the development of gametocytes. Liu M, et al. Proc Natl Acad Sci U S A, 2022 Mar 1. PMID 35210361, Free PMC Article
    2. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables tRNA (cytidine-5-)-methyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA m5C-methyltransferase, putative
    XP_001347789.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037282.1 Reference assembly

      Range
      434802..436541
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001347753.1 → XP_001347789.1  tRNA m5C-methyltransferase, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001347789.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024VEB7, A0A024WQ26, Q8IIQ2, W7FCK6, W7JAY5, W7JT80
      Conserved Domains (1) summary
      COG0144
      Location:211 → 493
      RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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