Pate1 prostate and testis expressed 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Pate1provided by MGI
Official Full Name: prostate and testis expressed 1provided by MGI
Primary source: MGI:MGI:4936886
See related: Ensembl:ENSMUSG00000091215 AllianceGenome:MGI:4936886
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Pate; Gm17252
Summary: Orthologous to human PATE1 (prostate and testis expressed 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Restricted expression toward genital fat pad adult (RPKM 29.3) See more
Orthologs: human all
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Genomic context

Location:: 9 A4; 9 20.39 cM

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	9	NC_000075.7 (35596182..35598686, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	9	NC_000075.6 (35685079..35687371, complement)

Chromosome 9 - NC_000075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Characterization of a gene cluster consisting of at least 14 expressed Pate gene members, including Acrv1, Sslp1 and a previously uncharacterized gene which we named Pate-X.
Title: Members of the murine Pate family are predominantly expressed in the epididymis in a segment-specific fashion and regulated by androgens and other testicular factors.

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1) 1 citation

General gene information

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General protein information

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Preferred Names: prostate and testis expressed protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001199953.2 → NP_001186882.1 prostate and testis expressed protein 1 precursor

Status: VALIDATED

Source sequence(s)

AC113081

Consensus CDS

CCDS57669.1

UniProtKB/TrEMBL

E9Q658

Related

ENSMUSP00000130484.3, ENSMUST00000170021.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000075.7 Reference GRCm39 C57BL/6J

Range

35596182..35598686 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001167677.1: Suppressed sequence

Description

NM_001167677.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.