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    scj1 DNAJ domain-containing protein Scj1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540021, updated on 18-Sep-2024

    Summary

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    Official Symbol
    scj1
    Official Full Name
    DNAJ domain-containing protein Scj1
    Primary source
    PomBase:SPBC1347.05c
    Locus tag
    SPOM_SPBC1347.05C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See scj1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    4
    Sequence:
    Chromosome: II; NC_003423.3 (4069163..4070724, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene sporulation specific PIL domain protein Meu14 Neighboring gene ncRNA Neighboring gene TIM22 inner membrane protein import complex subunit Tim54 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene serine/threonine protein kinase (CK1 family) Cki1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chaperone-Facilitated Aggregation of Thermo-Sensitive Proteins Shields Them from Degradation during Heat Stress. Cabrera M, et al. Cell Rep, 2020 Feb 18. PMID 32075773
    2. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
    3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables Hsp70 protein binding ISM
    Inferred from Sequence Model
    more info
    		  
    enables protein-folding chaperone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ERAD pathway ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in cellular response to unfolded protein ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in protein folding in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in protein refolding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in endoplasmic reticulum lumen ISO
    Inferred from Sequence Orthology
    more info
    		  
    NOT is_active_in protein aggregate center IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNAJ domain-containing protein Scj1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      4069163..4070724 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022621.3 → NP_596697.3  DNAJ domain-containing protein Scj1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596697.3

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94625, Q9Y8G9
      Conserved Domains (4) summary
      cd10719
      Location:168 → 237
      DnaJ_zf; Zinc finger domain of DnaJ and HSP40
      cd10747
      Location:236 → 376
      DnaJ_C; C-terminal substrate binding domain of DnaJ and HSP40
      COG0484
      Location:20 → 389
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:24 → 86
      DnaJ; DnaJ domain
    Nucleotide Protein
    Heading Accession and Version

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