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    lvs1 beige protein 1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540571, updated on 14-Nov-2024

    Summary

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    Official Symbol
    lvs1
    Official Full Name
    beige protein 1
    Primary source
    PomBase:SPBC28E12.06c
    Locus tag
    SPOM_SPBC28E12.06C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    SPBC3H7.16
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    Genomic context

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    See lvs1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (1846387..1854524, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Rho-type GTPase-activating protein Rga4 Neighboring gene protein Cbp7 Neighboring gene U3 snoRNP-associated protein Esf2 Neighboring gene ncRNA Neighboring gene serine/threonine protein kinase (CK1 family) Hhp1 Neighboring gene BRCT domain protein Neighboring gene FHA domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ypt4 and lvs1 regulate vacuolar size and function in Schizosaccharomyces pombe. Rains A, et al. Cell Logist, 2017. PMID 28944093, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylinositol binding ISM
    Inferred from Sequence Model
    more info
    		  
    Process Evidence Code Pubs
    involved_in autophagy ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in late endosome to vacuole transport NAS
    Non-traceable Author Statement
    more info
    		  
    involved_in vacuole organization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in fungal-type vacuole ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    beige protein 1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      1846387..1854524 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021659.4 → NP_595759.2  beige protein 1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595759.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q7LKZ7
      Conserved Domains (8) summary
      smart01026
      Location:1919 → 2202
      Beach; Beige/BEACH domain
      COG2319
      Location:2255 → 2485
      WD40; WD40 repeat [General function prediction only]
      cd01201
      Location:1738 → 1871
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      cd00065
      Location:2556 → 2600
      FYVE_like_SF; FYVE domain like superfamily
      pfam15787
      Location:715 → 837
      DUF4704; Domain of unknown function (DUF4704)
      sd00039
      Location:2255 → 2294
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:2255 → 2466
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl22861
      Location:380 → 534
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    Nucleotide Protein
    Heading Accession and Version

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