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    dph4 diphthamide biosynthesis protein Dph4 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2543534, updated on 14-Nov-2024

    Summary

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    Official Symbol
    dph4
    Official Full Name
    diphthamide biosynthesis protein Dph4
    Primary source
    PomBase:SPAC926.05c
    Locus tag
    SPOM_SPAC926.05C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See dph4 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    2
    Sequence:
    Chromosome: I; NC_003424.3 (3892009..3892771, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene Hsp90 chaperone Neighboring gene 5S ribosomal RNA Neighboring gene ncRNA Neighboring gene leucine-rich repeat-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The fission yeast nucleoporin Alm1 is required for proteasomal degradation of kinetochore components. Salas-Pino S, et al. J Cell Biol, 2017 Nov 6. PMID 28974540, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables Hsp70 protein binding ISM
    Inferred from Sequence Model
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein histidyl modification to diphthamide ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of cytoplasmic translation IC
    Inferred by Curator
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    diphthamide biosynthesis protein Dph4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      3892009..3892771 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019787.3 → NP_594366.1  diphthamide biosynthesis protein Dph4 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594366.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9UUG3
      Conserved Domains (3) summary
      COG2214
      Location:1 → 139
      CbpA; Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription]
      pfam00226
      Location:2 → 65
      DnaJ; DnaJ domain
      pfam05207
      Location:78 → 133
      zf-CSL; CSL zinc finger
    Nucleotide Protein
    Heading Accession and Version

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