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    rps1801 40S ribosomal protein uS13 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540180, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rps1801
    Official Full Name
    40S ribosomal protein uS13
    Primary source
    PomBase:SPBC16D10.11c
    Locus tag
    SPOM_SPBC16D10.11C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    rps18-1
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    Genomic context

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    See rps1801 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003423.3 (3619778..3620463, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA polymerase delta processivity factor Neighboring gene ncRNA Neighboring gene tRNA specific adenosine-34 deaminase subunit Tad2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fission yeast mtr1p regulates interphase microtubule cortical dwell-time. Carlier-Grynkorn F, et al. Biol Open, 2014 Jun 13. PMID 24928430, Free PMC Article
    2. Endogenous U2·U5·U6 snRNA complexes in S. pombe are intron lariat spliceosomes. Chen W, et al. RNA, 2014 Mar. PMID 24442611, Free PMC Article
    3. Proteomic and functional analysis of the noncanonical poly(A) polymerase Cid14. Keller C, et al. RNA, 2010 Jun. PMID 20403971, Free PMC Article
    4. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article
    5. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in ribosome biogenesis ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    40S ribosomal protein uS13

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      3619778..3620463 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022427.3 → NP_596506.1  40S ribosomal protein uS13 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596506.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94754, P0CT66, P0CT67, Q9USH4
      Conserved Domains (2) summary
      PTZ00134
      Location:1 → 152
      PTZ00134; 40S ribosomal protein S18; Provisional
      COG0099
      Location:12 → 152
      RpsM; Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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