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    swc5 Swr1 complex subunit Swc5 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539444, updated on 18-Sep-2024

    Summary

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    Official Symbol
    swc5
    Official Full Name
    Swr1 complex subunit Swc5
    Primary source
    PomBase:SPCC576.13
    Locus tag
    SPOM_SPCC576.13
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See swc5 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003421.2 (2101737..2102400)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene proteasome regulatory subunit Rpt3 Neighboring gene 60S ribosomal protein eL15 Neighboring gene FANCM-MHF complex subunit Mhf2 Neighboring gene ncRNA Neighboring gene diphthine synthase Dph5 Neighboring gene ncRNA Neighboring gene serine/threonine protein kinase Ksg1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast. Clément-Ziza M, et al. Mol Syst Biol, 2014 Nov 28. PMID 25432776, Free PMC Article
    2. An acetylated form of histone H2A.Z regulates chromosome architecture in Schizosaccharomyces pombe. Kim HS, et al. Nat Struct Mol Biol, 2009 Dec. PMID 19915592, Free PMC Article
    3. Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs. Zofall M, et al. Nature, 2009 Sep 17. PMID 19693008, Free PMC Article
    4. Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment. Shevchenko A, et al. Genome Biol, 2008. PMID 19040720, Free PMC Article
    5. The fission yeast nucleoporin Alm1 is required for proteasomal degradation of kinetochore components. Salas-Pino S, et al. J Cell Biol, 2017 Nov 6. PMID 28974540, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A swc5 variant impacting thousands of sense and antisense traits, presumably through epigenetic modification (H2A.Z occupancy), is identified.
      Title: Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin remodeling IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    involved_in transcription initiation-coupled chromatin remodeling IC
    Inferred by Curator
    more info
    		  
    Component Evidence Code Pubs
    part_of Swr1 complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Swr1 complex subunit Swc5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      2101737..2102400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023431.2 → NP_588440.1  Swr1 complex subunit Swc5 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588440.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O74897
      Conserved Domains (1) summary
      pfam07572
      Location:155 → 212
      BCNT; Bucentaur or craniofacial development
    Nucleotide Protein
    Heading Accession and Version

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