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    YHC3 amino acid transporter YHC3 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 853387, updated on 9-Dec-2024

    Summary

    Official Symbol
    YHC3
    Official Full Name
    amino acid transporter YHC3
    Primary source
    SGD:S000003595
    Locus tag
    YJL059W
    See related
    AllianceGenome:SGD:S000003595; FungiDB:YJL059W; VEuPathDB:YJL059W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    BTN1
    Summary
    Involved in L-arginine transmembrane transport; lysine transport; and regulation of intracellular pH. Located in fungal-type vacuole. Used to study neuronal ceroid lipofuscinosis 3. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 3. Orthologous to human CLN3 (CLN3 lysosomal/endosomal transmembrane protein, battenin). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See YHC3 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    1
    Sequence:
    Chromosome: X; NC_001142.9 (324964..326190)

    Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene linker nucleoporin NUP82 Neighboring gene kynurenine--oxoglutarate transaminase Neighboring gene Bit61p Neighboring gene protein kinase IKS1

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in L-arginine transmembrane transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in lysine transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of intracellular pH IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of intracellular pH IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in fungal-type vacuole IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in vacuole IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in vacuole IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    amino acid transporter YHC3
    NP_012476.1
    • Protein required for the ATP-dependent transport of arginine; vacuolar membrane protein; involved in the ATP-dependent transport of arginine into the vacuole and possibly in balancing ion homeostasis; human homolog CLN3 involved in Batten disease (juvenile onset neuronal ceroid lipofuscinosis) can complement yeast null mutant

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001142.9 Reference assembly

      Range
      324964..326190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001181492.1NP_012476.1  TPA: amino acid transporter YHC3 [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_012476.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VWC3, O60004, P47040, Q6B1E1
      UniProtKB/TrEMBL
      A6ZPR4, N1P351
      Conserved Domains (1) summary
      pfam02487
      Location:11396
      CLN3; CLN3 protein