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    Vps26c VPS26 endosomal protein sorting factor C [ Mus musculus (house mouse) ]

    Gene ID: 13185, updated on 9-Dec-2024

    Summary

    Official Symbol
    Vps26cprovided by MGI
    Official Full Name
    VPS26 endosomal protein sorting factor Cprovided by MGI
    Primary source
    MGI:MGI:1206040
    See related
    Ensembl:ENSMUSG00000022898 AllianceGenome:MGI:1206040
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Dcra; Dscr3
    Summary
    Predicted to be involved in endocytic recycling and intracellular protein transport. Predicted to be active in endosome. Is expressed in several structures, including alimentary system; cardiovascular system; genitourinary system; nervous system; and sensory organ. Orthologous to human VPS26C (VPS26 endosomal protein sorting factor C). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in placenta adult (RPKM 34.4), CNS E18 (RPKM 22.7) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Vps26c in Genome Data Viewer
    Location:
    16 C4; 16 55.23 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (94298583..94327488, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (94497724..94526629, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene developmental pluripotency associated 5 pseudogene Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class P Neighboring gene tetratricopeptide repeat domain 3 Neighboring gene predicted gene, 23692 Neighboring gene predicted gene, 31323 Neighboring gene STARR-positive B cell enhancer ABC_E1498 Neighboring gene STARR-positive B cell enhancer ABC_E9431 Neighboring gene STARR-seq mESC enhancer starr_41576 Neighboring gene STARR-seq mESC enhancer starr_41578 Neighboring gene STARR-positive B cell enhancer ABC_E5566 Neighboring gene dual-specificity tyrosine phosphorylation regulated kinase 1a Neighboring gene STARR-positive B cell enhancer mm9_chr16:94853523-94853824 Neighboring gene predicted gene, 53922 Neighboring gene predicted gene, 41504

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Clone Names

    • MGC5833

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in endocytic recycling  
    involved_in endocytic recycling  
    involved_in intracellular protein transport  
    involved_in intracellular protein transport  
    Component Evidence Code Pubs
    is_active_in endosome  
    located_in endosome  

    General protein information

    Preferred Names
    vacuolar protein sorting-associated protein 26C
    Names
    DSCR3 arrestin fold containing
    Down syndrome critical region gene 3
    Down syndrome critical region gene A
    Down syndrome critical region protein 3 homolog
    Down syndrome critical region protein A homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007834.3NP_031860.1  vacuolar protein sorting-associated protein 26C

      See identical proteins and their annotated locations for NP_031860.1

      Status: VALIDATED

      Source sequence(s)
      AK077628, BU709449, BY483431
      Consensus CDS
      CCDS28349.1
      UniProtKB/Swiss-Prot
      O35075, Q542V5
      Related
      ENSMUSP00000023615.7, ENSMUST00000023615.7
      Conserved Domains (1) summary
      cl22903
      Location:1283
      Arrestin_N; Arrestin (or S-antigen), N-terminal domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      94298583..94327488 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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