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    C2cd4b C2 calcium-dependent domain containing 4B [ Mus musculus (house mouse) ]

    Gene ID: 75697, updated on 9-Dec-2024

    Summary

    Official Symbol
    C2cd4bprovided by MGI
    Official Full Name
    C2 calcium-dependent domain containing 4Bprovided by MGI
    Primary source
    MGI:MGI:1922947
    See related
    Ensembl:ENSMUSG00000091956 AllianceGenome:MGI:1922947
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam148b; 3300001A09Rik
    Summary
    Predicted to be involved in positive regulation of acute inflammatory response; regulation of cell adhesion; and regulation of vascular permeability involved in acute inflammatory response. Is expressed in several structures, including embryo endoderm and gut. Orthologous to human C2CD4B (C2 calcium dependent domain containing 4B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in colon adult (RPKM 37.6), stomach adult (RPKM 27.8) and 5 other tissues See more
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    Genomic context

    See C2cd4b in Genome Data Viewer
    Location:
    9 C; 9 36.72 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (67623506..67668215)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (67716224..67760933)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_24492 Neighboring gene microRNA 190a Neighboring gene talin 2 Neighboring gene STARR-seq mESC enhancer starr_24494 Neighboring gene STARR-seq mESC enhancer starr_24495 Neighboring gene STARR-seq mESC enhancer starr_24496 Neighboring gene STARR-seq mESC enhancer starr_24498 Neighboring gene predicted gene, 30936 Neighboring gene RIKEN cDNA M5C1000I18 gene Neighboring gene STARR-seq mESC enhancer starr_24499 Neighboring gene STARR-seq mESC enhancer starr_24500 Neighboring gene microRNA 7241 Neighboring gene microRNA 7242 Neighboring gene predicted gene 7787 Neighboring gene STARR-seq mESC enhancer starr_24501 Neighboring gene C2 calcium-dependent domain containing 4A Neighboring gene vacuolar protein sorting 13C Neighboring gene STARR-seq mESC enhancer starr_24502

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General protein information

    Preferred Names
    C2 calcium-dependent domain-containing protein 4B
    Names
    family with sequence similarity 148, member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081314.2NP_001074783.1  C2 calcium-dependent domain-containing protein 4B

      See identical proteins and their annotated locations for NP_001074783.1

      Status: VALIDATED

      Source sequence(s)
      BP769160, BP769161, CT573422
      Consensus CDS
      CCDS40675.1
      UniProtKB/TrEMBL
      Q80XU5
      Related
      ENSMUSP00000131138.2, ENSMUST00000171652.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      67623506..67668215
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511533.3XP_006511596.1  C2 calcium-dependent domain-containing protein 4B isoform X1

      See identical proteins and their annotated locations for XP_006511596.1

      UniProtKB/TrEMBL
      Q80XU5