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    Gm15834 predicted gene 15834 [ Mus musculus (house mouse) ]

    Gene ID: 100504455, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm15834provided by MGI
    Official Full Name
    predicted gene 15834provided by MGI
    Primary source
    MGI:MGI:3802168
    See related
    Ensembl:ENSMUSG00000085054 AllianceGenome:MGI:3802168
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C130065N10Rik
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm15834 in Genome Data Viewer
    Location:
    1 C1.3; 1 29.11 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (58544305..58578227)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (58505115..58543920)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:58501960-58502147 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:58502340-58502523 Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 3 Neighboring gene Ngg1 interacting factor 3-like 1 (S. pombe) Neighboring gene predicted gene, 23966 Neighboring gene origin recognition complex, subunit 2 Neighboring gene STARR-seq mESC enhancer starr_01014 Neighboring gene STARR-positive B cell enhancer ABC_E3277 Neighboring gene STARR-seq mESC enhancer starr_01015 Neighboring gene hyccin PI4KA lipid kinase complex subunit 2 Neighboring gene STARR-positive B cell enhancer ABC_E10012 Neighboring gene NADH:ubiquinone oxidoreductase subunit B3 Neighboring gene STARR-seq mESC enhancer starr_01016 Neighboring gene Fanconi anemia, complementation group L pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
    3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Clone Names

    • AC118698.3

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_190137.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC118698
      Related
      ENSMUST00000321506.1

    2. NR_190138.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC118698
      Related
      ENSMUST00000139825.2

    3. NR_190139.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC118698

    4. NR_190140.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC118698

    5. NR_190141.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC118698

    6. NR_190143.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC118698

    7. NR_190144.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC118698

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      58544305..58578227
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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