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    Ms4a19 membrane-spanning 4-domains, subfamily A, member 19 [ Mus musculus (house mouse) ]

    Gene ID: 69416, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ms4a19provided by MGI
    Official Full Name
    membrane-spanning 4-domains, subfamily A, member 19provided by MGI
    Primary source
    MGI:MGI:1916666
    See related
    Ensembl:ENSMUSG00000024728 AllianceGenome:MGI:1916666
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700025F22Rik
    Summary
    Predicted to be involved in cell surface receptor signaling pathway. Predicted to be active in plasma membrane. Orthologous to human MS4A19P (membrane spanning 4-domains A19, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 16.9) See more
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    Genomic context

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    See Ms4a19 in Genome Data Viewer
    Location:
    19 A; 19 7.82 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11117026..11142987, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11139662..11165623, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_45564 Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 pseudogene Neighboring gene membrane-spanning 4-domains, subfamily A, member 20 Neighboring gene NS1-associated protein 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_45565 Neighboring gene membrane-spanning 4-domains, subfamily A, member 13 Neighboring gene RIKEN cDNA 4930526L06 gene Neighboring gene STARR-seq mESC enhancer starr_45566 Neighboring gene STARR-seq mESC enhancer starr_45567 Neighboring gene membrane-spanning 4-domains, subfamily A, member 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC69416

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001370777.1 → NP_001357706.1  uncharacterized protein LOC69416 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC148321
      Conserved Domains (1) summary
      pfam04103
      Location:16 → 121
      CD20; CD20-like family

    2. NM_027074.4 → NP_081350.1  uncharacterized protein LOC69416 isoform 2

      See identical proteins and their annotated locations for NP_081350.1

      Status: VALIDATED

      Source sequence(s)
      AC148321
      Consensus CDS
      CCDS50394.1
      UniProtKB/TrEMBL
      Q9D9Y7
      Related
      ENSMUSP00000077828.5, ENSMUST00000078770.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      11117026..11142987 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011247336.2 → XP_011245638.1  uncharacterized protein LOC69416 isoform X1

      See identical proteins and their annotated locations for XP_011245638.1

      Conserved Domains (1) summary
      pfam04103
      Location:16 → 121
      CD20; CD20-like family

    2. XM_030251071.1 → XP_030106931.1  uncharacterized protein LOC69416 isoform X1

      Conserved Domains (1) summary
      pfam04103
      Location:16 → 121
      CD20; CD20-like family

    3. XM_030251072.1 → XP_030106932.1  uncharacterized protein LOC69416 isoform X1

      Conserved Domains (1) summary
      pfam04103
      Location:16 → 121
      CD20; CD20-like family
    Nucleotide Protein Strain
    Heading Accession and Version

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