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    Speer4e1 spermatogenesis associated glutamate (E)-rich protein 4E1 [ Mus musculus (house mouse) ]

    Gene ID: 624245, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Speer4e1provided by MGI
    Official Full Name
    spermatogenesis associated glutamate (E)-rich protein 4E1provided by MGI
    Primary source
    MGI:MGI:2668871
    See related
    Ensembl:ENSMUSG00000091255 AllianceGenome:MGI:2668871
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Speer4e
    Expression
    Restricted expression toward testis adult (RPKM 11.5) See more
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    Genomic context

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    See Speer4e1 in Genome Data Viewer
    Location:
    5 A2; 5 6.47 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (14983645..14988489, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (14933631..14938475, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene piccolo (presynaptic cytomatrix protein) Neighboring gene arginine/serine-rich coiled-coil 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_12477 Neighboring gene STARR-seq mESC enhancer starr_12478 Neighboring gene STARR-seq mESC enhancer starr_12479 Neighboring gene STARR-seq mESC enhancer starr_12480 Neighboring gene predicted gene, 52805 Neighboring gene predicted gene 9758 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 8, pseudogene 1 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4E2 Neighboring gene predicted gene 17019

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. SPEER--a new family of testis-specific genes from the mouse. Spiess AN, et al. Biol Reprod, 2003 Jun. PMID 12606357
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC118263

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    spermatogenesis associated glutamate (E)-rich protein 4e
    Names
    sperm-associated glutamate (E)-rich protein 4e
    spermatogenic-associated glutamate (E)-rich protein 4e

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001122661.1 → NP_001116133.1  spermatogenesis associated glutamate (E)-rich protein 4e

      Status: VALIDATED

      Source sequence(s)
      AC144480
      Consensus CDS
      CCDS51417.1
      UniProtKB/TrEMBL
      K7N6S8, Q8C5Y0
      Related
      ENSMUSP00000125587.3, ENSMUST00000159973.3
      Conserved Domains (1) summary
      pfam04822
      Location:52 → 133
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      14983645..14988489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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