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    CG11076 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43830, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CG11076provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0039929
    Locus tag
    Dmel_CG11076
    See related
    AllianceGenome:FB:FBgn0039929
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG11076
    Summary
    Predicted to be involved in transcription by RNA polymerase I. Predicted to be part of RNA polymerase I complex. Is expressed in several structures, including anterior endoderm; dorsal pharyngeal muscle cell; embryonic/larval midgut primordium; ganglia; and gut section. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG11076 in Genome Data Viewer
    Location:
    102F6-102F6; 4-0 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 4 NC_004353.4 (1029711..1031757, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 4 NC_004353.3 (1050337..1052383, complement)

    Chromosome 4 - NC_004353.4Genomic Context describing neighboring genes Neighboring gene Plexin A Neighboring gene antisense RNA:CR44031 Neighboring gene ATP synthase, beta subunit Neighboring gene Mitochondrial inner membrane protein MPV17 Neighboring gene Calcium/calmodulin-dependent protein kinase II Neighboring gene Zyxin Neighboring gene apolipophorin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Remote homology identification of the Drosophila melanogaster ortholog of the RNA Polymerase I subunit Rpa34/POLR1G. Palumbo R, et al. MicroPubl Biol, 2024. PMID 38287926, Free PMC Article
    2. Evolution of a distinct genomic domain in Drosophila: comparative analysis of the dot chromosome in Drosophila melanogaster and Drosophila virilis. Leung W, et al. Genetics, 2010 Aug. PMID 20479145, Free PMC Article
    3. Painting of fourth and chromosome-wide regulation of the 4th chromosome in Drosophila melanogaster. Johansson AM, et al. EMBO J, 2007 May 2. PMID 17318176, Free PMC Article
    4. Antagonistic roles of Drosophila Tctp and Brahma in chromatin remodelling and stabilizing repeated sequences. Hong ST, et al. Nat Commun, 2016 Sep 30. PMID 27687497, Free PMC Article
    5. Systematic imaging reveals features and changing localization of mRNAs in Drosophila development. Jambor H, et al. Elife, 2015 Apr 2. PMID 25838129, Free PMC Article

    See all (34) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase I ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase I complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG11076-PA
    CG11076-PD
    CG11076-PE
    NP_001245429.2
    • non-AUG (CUG) translation initiation
    NP_651943.2
    • non-AUG (CUG) translation initiation

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004353.4 Reference assembly

      Range
      1029711..1031757 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001258500.1 → NP_001245429.2  uncharacterized protein Dmel_CG11076, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245429.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7KQM8

    2. NM_143686.4 → NP_651943.2  uncharacterized protein Dmel_CG11076, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651943.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7KQM8

    3. NM_166807.3 → NP_726630.2  uncharacterized protein Dmel_CG11076, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_726630.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SZ08, Q9V493
      Related
      FBpp0088285
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7JZK8 Q7JZK8
    Q7KQM8 Q7KQM8
    Q9V493 Q9V493

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