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    pad poils au dos [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41981, updated on 9-Dec-2024

    Summary

    Official Symbol
    padprovided by FlyBase
    Official Full Name
    poils au dosprovided by FlyBase
    Primary source
    FLYBASE:FBgn0038418
    Locus tag
    Dmel_CG10309
    See related
    AllianceGenome:FB:FBgn0038418
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG10309; Dmel\CG10309
    Summary
    Enables DNA binding activity. Involved in chaeta morphogenesis and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in chromosome. Is expressed in embryonic brain; larval ventral nerve cord; and organism. Orthologous to human ZNF623 (zinc finger protein 623). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See pad in Genome Data Viewer
    Location:
    89B13-89B13; 3-58 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (16342318..16345829)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (12168040..12171551)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Sulfated Neighboring gene uncharacterized protein Neighboring gene Splicing factor 2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Mesencephalic astrocyte-derived neurotrophic factor Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables chromatin insulator sequence binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in chaeta morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in chromosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    poils au dos
    Names
    CG10309-PB
    pad-PB

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      16342318..16345829
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142277.3NP_650534.2  poils au dos [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650534.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q4V6V1, Q9VEW6
      Conserved Domains (4) summary
      smart00868
      Location:1687
      zf-AD; Zinc-finger associated domain (zf-AD)
      sd00017
      Location:710730
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:766788
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:752777
      zf-H2C2_2; Zinc-finger double domain