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    Gm38412 predicted gene, 38412 [ Mus musculus (house mouse) ]

    Gene ID: 329730, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm38412provided by MGI
    Official Full Name
    predicted gene, 38412provided by MGI
    Primary source
    MGI:MGI:5621297
    See related
    AllianceGenome:MGI:5621297
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm43257; 4631419I20
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm38412 in Genome Data Viewer
    Location:
    3; 3 F2.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (104318292..104324851)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (104409161..104417535)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 3 Neighboring gene STARR-positive B cell enhancer ABC_E1628 Neighboring gene STARR-seq mESC enhancer starr_08607 Neighboring gene predicted gene, 23077 Neighboring gene STARR-seq mESC enhancer starr_08609 Neighboring gene predicted gene 5546 Neighboring gene STARR-seq mESC enhancer starr_08610 Neighboring gene STARR-seq mESC enhancer starr_08611 Neighboring gene STARR-positive B cell enhancer ABC_E4569 Neighboring gene STARR-seq mESC enhancer starr_08613 Neighboring gene STARR-seq mESC enhancer starr_08614 Neighboring gene STARR-seq mESC enhancer starr_08615 Neighboring gene phosducin-like 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_08617 Neighboring gene leucine-rich repeats and immunoglobulin-like domains 2 Neighboring gene STARR-positive B cell enhancer ABC_E4570 Neighboring gene VISTA enhancer mm1537 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:104369426-104369609 Neighboring gene predicted gene, 34490

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_177245.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC124741

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      104318292..104324851
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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