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    Wfdc5 WAP four-disulfide core domain 5 [ Mus musculus (house mouse) ]

    Gene ID: 209232, updated on 27-Nov-2024

    Summary

    Official Symbol
    Wfdc5provided by MGI
    Official Full Name
    WAP four-disulfide core domain 5provided by MGI
    Primary source
    MGI:MGI:2384800
    See related
    Ensembl:ENSMUSG00000040154 AllianceGenome:MGI:2384800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Prg5; Wap1
    Summary
    Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in antibacterial humoral response and innate immune response. Predicted to be active in extracellular space. Orthologous to human WFDC5 (WAP four-disulfide core domain 5). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in stomach adult (RPKM 3.7) and lung adult (RPKM 2.8) See more
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    Genomic context

    See Wfdc5 in Genome Data Viewer
    Location:
    2 H3; 2 84.6 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (164018245..164024662, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (164176325..164182742, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6014 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:163910112-163910326 Neighboring gene serine/threonine kinase 4 Neighboring gene STARR-positive B cell enhancer mm9_chr2:163954265-163954566 Neighboring gene K+ voltage-gated channel, subfamily S, 1 Neighboring gene RIKEN cDNA A730032A03 gene Neighboring gene predicted gene, 53202 Neighboring gene STARR-seq mESC enhancer starr_06321 Neighboring gene WAP four-disulfide core domain 12 Neighboring gene WAP four-disulfide core domain 15A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (1)  1 citation

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in antibacterial humoral response IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in innate immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    WAP four-disulfide core domain protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145369.3NP_663344.2  WAP four-disulfide core domain protein 5 precursor

      See identical proteins and their annotated locations for NP_663344.2

      Status: VALIDATED

      Source sequence(s)
      AK131905, AL591512, AV091316, AY669505
      Consensus CDS
      CCDS17023.1
      UniProtKB/TrEMBL
      Q4KXB6, Q8VE57
      Related
      ENSMUSP00000035824.6, ENSMUST00000045127.12
      Conserved Domains (1) summary
      pfam00095
      Location:80121
      WAP; WAP-type (Whey Acidic Protein) 'four-disulfide core'

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      164018245..164024662 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001781780.3 RNA Sequence