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    Ltf lactotransferrin [ Mus musculus (house mouse) ]

    Gene ID: 17002, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ltfprovided by MGI
    Official Full Name
    lactotransferrinprovided by MGI
    Primary source
    MGI:MGI:96837
    See related
    Ensembl:ENSMUSG00000032496 AllianceGenome:MGI:96837
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Lf; Csp82; Ms10r; MMS10R
    Summary
    Enables peptidase activity. Predicted to be involved in several processes, including defense response to other organism; regulation of signal transduction; and regulation of tumor necrosis factor superfamily cytokine production. Located in cytoplasm. Is expressed in several structures, including early conceptus; epithelium; genitourinary system; gut; and liver. Human ortholog(s) of this gene implicated in candidiasis; lung non-small cell carcinoma; and renal cell carcinoma. Orthologous to human LTF (lactotransferrin). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in liver E18 (RPKM 57.9), ovary adult (RPKM 22.0) and 6 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ltf in Genome Data Viewer
    Location:
    9 F2; 9 60.79 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (110848360..110871834)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (111019292..111042766)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 2 Neighboring gene predicted gene 10030 Neighboring gene receptor transporter protein 3 Neighboring gene STARR-seq mESC enhancer starr_25285 Neighboring gene C-C motif chemokine receptor-like 2 Neighboring gene ribosomal protein L31, pseudogene 19

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (6) 
    • Targeted (5)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables cysteine-type endopeptidase inhibitor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables heparin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables iron ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables lipopolysaccharide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables lipopolysaccharide binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables membrane destabilizing activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables peptidase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein serine/threonine kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein serine/threonine kinase activator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in antibacterial humoral response IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in antibacterial humoral response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in antibacterial humoral response ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in antifungal humoral response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in antifungal humoral response ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in antimicrobial humoral immune response mediated by antimicrobial peptide IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in antimicrobial humoral immune response mediated by antimicrobial peptide ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in bone morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in bone morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in cytolysis by host of symbiont cells ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in defense response to Gram-negative bacterium IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in defense response to Gram-negative bacterium ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in defense response to Gram-positive bacterium ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in innate immune response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in innate immune response in mucosa ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in innate immune response in mucosa ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in iron ion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in iron ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in killing of cells of another organism IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in killing of cells of another organism ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation by host of viral process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation by host of viral process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of ATP-dependent activity ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of apoptotic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of cysteine-type endopeptidase activity ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of lipopolysaccharide-mediated signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of lipopolysaccharide-mediated signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of membrane potential ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of osteoclast development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of single-species biofilm formation in or on host organism ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of single-species biofilm formation in or on host organism ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of tumor necrosis factor (ligand) superfamily member 11 production ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of viral genome replication IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of viral genome replication ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of viral process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in ossification IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of NF-kappaB transcription factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of bone mineralization involved in bone maturation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of canonical NF-kappaB signal transduction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of chondrocyte proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of chondrocyte proliferation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of osteoblast differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of osteoblast differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of osteoblast proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of osteoblast proliferation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of protein serine/threonine kinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of toll-like receptor 4 signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of toll-like receptor 4 signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of cytokine production ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cytokine production ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of tumor necrosis factor production ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of tumor necrosis factor production ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in early endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of protein-containing complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in recycling endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in secretory granule ISO
    Inferred from Sequence Orthology
    more info
     
    located_in specific granule ISO
    Inferred from Sequence Orthology
    more info
     
    located_in specific granule ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    lactotransferrin
    Names
    N lobe
    lactoferrin
    minisatellite 10r detected by probe MMS10
    NP_032548.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008522.3NP_032548.2  lactotransferrin precursor

      See identical proteins and their annotated locations for NP_032548.2

      Status: VALIDATED

      Source sequence(s)
      AK036491
      Consensus CDS
      CCDS23581.1
      UniProtKB/Swiss-Prot
      P08071, P70690, Q61799, Q8CBA0, Q922P2
      UniProtKB/TrEMBL
      Q3TP24, Q3UBV2, Q4FJR3
      Related
      ENSMUSP00000035077.4, ENSMUST00000035077.8
      Conserved Domains (4) summary
      smart00094
      Location:363692
      TR_FER; Transferrin
      cd13617
      Location:361691
      PBP2_transferrin_C; The C-lobe of transferrin, a member of the type 2 periplasmic binding protein fold superfamily
      cd13618
      Location:23349
      PBP2_transferrin_N; The N-lobe of transferrin, a member of the type 2 periplasmic binding protein fold superfamily
      pfam00405
      Location:24351
      Transferrin; Transferrin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      110848360..110871834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)