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    Ankrd52 ankyrin repeat domain 52 [ Mus musculus (house mouse) ]

    Gene ID: 237615, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ankrd52provided by MGI
    Official Full Name
    ankyrin repeat domain 52provided by MGI
    Primary source
    MGI:MGI:2444029
    See related
    Ensembl:ENSMUSG00000014498 AllianceGenome:MGI:2444029
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    6430544C07; G431002C21Rik
    Summary
    Orthologous to human ANKRD52 (ankyrin repeat domain 52). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in thymus adult (RPKM 25.9), ovary adult (RPKM 24.4) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Ankrd52 in Genome Data Viewer
    Location:
    10 D3; 10 76.54 cM
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (128212993..128229875)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (128377124..128394006)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene citrate synthase Neighboring gene predicted gene, 23182 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:127806017-127806126 Neighboring gene coenzyme Q10A Neighboring gene microRNA 6914 Neighboring gene microRNA 6915 Neighboring gene solute carrier family 39 (metal ion transporter), member 5 Neighboring gene nucleic acid binding protein 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:127846873-127847141 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:127848187-127848374 Neighboring gene STARR-positive B cell enhancer ABC_E6940

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Tagging genes with cassette-exchange sites. Cobellis G, et al. Nucleic Acids Res, 2005 Mar 1. PMID 15741177, Free PMC Article
    2. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
    3. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
    4. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
    5. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C
    Names
    PP6-ARS-C
    serine/threonine-protein phosphatase 6 regulatory subunit ARS-C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172790.2 → NP_766378.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C

      See identical proteins and their annotated locations for NP_766378.1

      Status: PROVISIONAL

      Source sequence(s)
      AC090489
      Consensus CDS
      CCDS24274.1
      UniProtKB/Swiss-Prot
      Q148Z3, Q8BTI7
      Related
      ENSMUSP00000014642.4, ENSMUST00000014642.10
      Conserved Domains (5) summary
      cd00204
      Location:417 → 570
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:108 → 137
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:791 → 843
      Ank_4; Ankyrin repeats (many copies)
      cl26072
      Location:962 → 1029
      Ank_5; Ankyrin repeats (many copies)
      cl26073
      Location:20 → 317
      Ank_2; Ankyrin repeats (3 copies)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      128212993..128229875
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BTI7.1 GenPept UniProtKB/Swiss-Prot:Q8BTI7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
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