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    TMOD1 tropomodulin 1 [ Sus scrofa (pig) ]

    Gene ID: 100316850, updated on 3-Dec-2024

    Summary

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    Gene symbol
    TMOD1
    Gene description
    tropomodulin 1
    See related
    Ensembl:ENSSSCG00000063066
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in psoas major muscle (RPKM 35.4), longissimus dorsi muscle (RPKM 32.9) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See TMOD1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (239375150..239468387)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (267547207..267646850, complement)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 180 Neighboring gene tudor domain containing 7 Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene nuclear cap binding protein subunit 1 Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene forkhead box E1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tropomyosin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in myofibril assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pointed-end actin filament capping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in myofibril IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in striated muscle thin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tropomodulin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      239375150..239468387
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003353588.5 → XP_003353636.2  tropomodulin-1

      UniProtKB/TrEMBL
      A0A287BCZ0, A0A4X1UDZ5, A0A8D0NFR5, A0A8D1MAI6
      Related
      ENSSSCP00000054194.1, ENSSSCT00000037726.3
      Conserved Domains (2) summary
      pfam03250
      Location:3 → 143
      Tropomodulin; Tropomodulin
      cl26161
      Location:195 → 289
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

    2. XM_021066359.1 → XP_020922018.1  tropomodulin-1

      UniProtKB/TrEMBL
      A0A287BCZ0, A0A4X1UDZ5, A0A8D0NFR5, A0A8D1MAI6
      Conserved Domains (2) summary
      pfam03250
      Location:3 → 143
      Tropomodulin; Tropomodulin
      cl26161
      Location:195 → 289
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    Nucleotide Protein
    Heading Accession and Version

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