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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029858.3 RefSeqGene
- Range
-
5109..17206
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001243689.2 → NP_001230618.1 LETM1 domain-containing protein 1 isoform b
See identical proteins and their annotated locations for NP_001230618.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame donor splice site at an internal exon in the 5' coding region compared to variant 1. This results in a longer isoform (b, also known as 3) containing a 13 aa protein segment not found in isoform 1.
- Source sequence(s)
-
AC087884
- Consensus CDS
-
CCDS58231.1
- UniProtKB/TrEMBL
-
B2RCH7
- Related
- ENSP00000389903.2, ENST00000418425.6
- Conserved Domains (1) summary
-
- pfam07766
Location:80 → 351
- LETM1; LETM1-like protein
-
NM_001300765.2 → NP_001287694.1 LETM1 domain-containing protein 1 isoform c
See identical proteins and their annotated locations for NP_001287694.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) lacks three alternate in-frame exons in the central coding region, compared to variant 1. The encoded isoform (c, also known as 7) is shorter than isoform 1.
- Source sequence(s)
-
AC087884
- Consensus CDS
-
CCDS73469.1
- UniProtKB/TrEMBL
-
F8W1Z2
- Related
- ENSP00000447419.1, ENST00000547008.5
- Conserved Domains (1) summary
-
- pfam07766
Location:79 → 221
- LETM1; LETM1-like protein
-
NM_001351312.2 → NP_001338241.1 LETM1 domain-containing protein 1 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (2), as well as variant 12, encodes isoform d.
- Source sequence(s)
-
AC087884
- Consensus CDS
-
CCDS44883.1
- UniProtKB/TrEMBL
-
B7Z7F8
- Related
- ENSP00000450163.1, ENST00000550929.5
- Conserved Domains (1) summary
-
- pfam07766
Location:23 → 289
- LETM1; LETM1-like protein
-
NM_001351313.2 → NP_001338242.1 LETM1 domain-containing protein 1 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (4), as well as variants 25-27, encodes isoform e.
- Source sequence(s)
-
AC087884
- Conserved Domains (1) summary
-
- pfam07766
Location:1 → 188
- LETM1; LETM1-like protein
-
NM_001351315.2 → NP_001338244.1 LETM1 domain-containing protein 1 isoform f
Status: REVIEWED
- Source sequence(s)
-
AC087884
- UniProtKB/TrEMBL
-
B2RCH7
- Conserved Domains (1) summary
-
- pfam07766
Location:86 → 352
- LETM1; LETM1-like protein
-
NM_001351316.2 → NP_001338245.1 LETM1 domain-containing protein 1 isoform g
Status: REVIEWED
- Source sequence(s)
-
AC087884
- UniProtKB/TrEMBL
-
B2RCH7
- Conserved Domains (1) summary
-
- pfam07766
Location:86 → 312
- LETM1; LETM1-like protein
-
NM_001351317.2 → NP_001338246.1 LETM1 domain-containing protein 1 isoform h
Status: REVIEWED
- Source sequence(s)
-
AC087884
- UniProtKB/TrEMBL
-
B2RCH7
- Conserved Domains (1) summary
-
- pfam07766
Location:79 → 305
- LETM1; LETM1-like protein
-
NM_001351319.2 → NP_001338248.1 LETM1 domain-containing protein 1 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (12), as well as variant 2, encodes isoform d.
- Source sequence(s)
-
AC087884
- Consensus CDS
-
CCDS44883.1
- UniProtKB/TrEMBL
-
B7Z7F8
- Conserved Domains (1) summary
-
- pfam07766
Location:23 → 289
- LETM1; LETM1-like protein
-
NM_001351320.2 → NP_001338249.1 LETM1 domain-containing protein 1 isoform k
Status: REVIEWED
- Source sequence(s)
-
AC087884
- UniProtKB/TrEMBL
-
F8VZA2
- Conserved Domains (1) summary
-
- pfam07766
Location:23 → 249
- LETM1; LETM1-like protein
-
NM_001351321.2 → NP_001338250.1 LETM1 domain-containing protein 1 isoform l
Status: REVIEWED
- Source sequence(s)
-
AC087884
- Conserved Domains (1) summary
-
- pfam07766
Location:79 → 255
- LETM1; LETM1-like protein
-
NM_001351322.2 → NP_001338251.1 LETM1 domain-containing protein 1 isoform m
Status: REVIEWED
- Source sequence(s)
-
AC087884
- UniProtKB/TrEMBL
-
B7Z7F8
- Conserved Domains (1) summary
-
- pfam07766
Location:1 → 251
- LETM1; LETM1-like protein
-
NM_001351323.2 → NP_001338252.1 LETM1 domain-containing protein 1 isoform m
Status: REVIEWED
- Source sequence(s)
-
AC087884
- UniProtKB/TrEMBL
-
B7Z7F8
- Conserved Domains (1) summary
-
- pfam07766
Location:1 → 251
- LETM1; LETM1-like protein
-
NM_001351324.2 → NP_001338253.1 LETM1 domain-containing protein 1 isoform m
Status: REVIEWED
- Source sequence(s)
-
AC087884
- UniProtKB/TrEMBL
-
B7Z7F8
- Conserved Domains (1) summary
-
- pfam07766
Location:1 → 251
- LETM1; LETM1-like protein
-
NM_001351325.2 → NP_001338254.1 LETM1 domain-containing protein 1 isoform n
Status: REVIEWED
- Source sequence(s)
-
AC087884
- Conserved Domains (1) summary
-
- pfam07766
Location:116 → 244
- LETM1; LETM1-like protein
-
NM_001351326.2 → NP_001338255.1 LETM1 domain-containing protein 1 isoform o
Status: REVIEWED
- Source sequence(s)
-
AC087884
- UniProtKB/TrEMBL
-
B7Z7F8
- Conserved Domains (1) summary
-
- pfam07766
Location:37 → 239
- LETM1; LETM1-like protein
-
NM_001351327.2 → NP_001338256.1 LETM1 domain-containing protein 1 isoform o
Status: REVIEWED
- Source sequence(s)
-
AC087884
- UniProtKB/TrEMBL
-
B7Z7F8
- Conserved Domains (1) summary
-
- pfam07766
Location:37 → 239
- LETM1; LETM1-like protein
-
NM_001351328.2 → NP_001338257.1 LETM1 domain-containing protein 1 isoform p
Status: REVIEWED
- Source sequence(s)
-
AC087884
- Conserved Domains (1) summary
-
- pfam07766
Location:86 → 228
- LETM1; LETM1-like protein
-
NM_001351330.2 → NP_001338259.1 LETM1 domain-containing protein 1 isoform t
Status: REVIEWED
- Source sequence(s)
-
AC087884
- Consensus CDS
-
CCDS86301.1
- UniProtKB/TrEMBL
-
F8VP71
- Related
- ENSP00000450333.1, ENST00000552739.5
- Conserved Domains (1) summary
-
- pfam07766
Location:42 → 228
- LETM1; LETM1-like protein
-
NM_001351332.2 → NP_001338261.1 LETM1 domain-containing protein 1 isoform u
Status: REVIEWED
- Source sequence(s)
-
AC087884
- Conserved Domains (1) summary
-
- pfam07766
Location:93 → 228
- LETM1; LETM1-like protein
-
NM_001351333.2 → NP_001338262.1 LETM1 domain-containing protein 1 isoform q
Status: REVIEWED
- Source sequence(s)
-
AC087884
- Conserved Domains (1) summary
-
- pfam07766
Location:79 → 181
- LETM1; LETM1-like protein
-
NM_001351334.2 → NP_001338263.1 LETM1 domain-containing protein 1 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (25), as well as variants 4, 26, and 27, encodes isoform e (also called isoform r).
- Source sequence(s)
-
AC087884
- Conserved Domains (1) summary
-
- pfam07766
Location:1 → 188
- LETM1; LETM1-like protein
-
NM_001351335.2 → NP_001338264.1 LETM1 domain-containing protein 1 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (26), as well as variants 4, 25, and 27, encodes isoform e (also called isoform r).
- Source sequence(s)
-
AC087884
- Conserved Domains (1) summary
-
- pfam07766
Location:1 → 188
- LETM1; LETM1-like protein
-
NM_001351336.2 → NP_001338265.1 LETM1 domain-containing protein 1 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (27), as well as variants 4, 25, and 26, encodes isoform e (also called isoform r).
- Source sequence(s)
-
AC087884
- Conserved Domains (1) summary
-
- pfam07766
Location:1 → 188
- LETM1; LETM1-like protein
-
NM_001351337.2 → NP_001338266.1 LETM1 domain-containing protein 1 isoform s
Status: REVIEWED
- Source sequence(s)
-
AC087884, KF455649
- Conserved Domains (1) summary
-
- pfam07766
Location:79 → 181
- LETM1; LETM1-like protein
-
NM_015416.5 → NP_056231.3 LETM1 domain-containing protein 1 isoform a
See identical proteins and their annotated locations for NP_056231.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the predominant protein-coding transcript, and encodes isoform a (also known as HCCR-1 or 1).
- Source sequence(s)
-
AC087884
- Consensus CDS
-
CCDS8806.1
- UniProtKB/Swiss-Prot
- A6NER7, B3KXK7, Q6P1Q0, Q6X2E4, Q6X2E5, Q7L2G9, Q7L690, Q8WXW6, Q96PK7, Q9BY59, Q9Y3X3
- UniProtKB/TrEMBL
- A0A384P5D7, B2RCH7
- Related
- ENSP00000262055.4, ENST00000262055.9
- Conserved Domains (1) summary
-
- pfam07766
Location:79 → 345
- LETM1; LETM1-like protein
RNA
-
NR_045019.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks two consecutive exons compared to variant 1. It is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with the translation of the longest ORF; translation of the upstream ORF renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC087884
- Related
-
ENST00000547318.5
-
NR_045020.3 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884, KF455649
-
NR_147098.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884, BU688852
-
NR_147099.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147100.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147101.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147102.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147103.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147104.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147105.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147106.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147107.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147108.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147109.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147110.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147111.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147112.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
- Related
-
ENST00000550100.5
-
NR_147113.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
- Related
-
ENST00000547555.5
-
NR_147114.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147115.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
- Related
-
ENST00000380135.7
-
NR_147116.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147117.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147118.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147119.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
-
NR_147120.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087884
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000012.12 Reference GRCh38.p14 Primary Assembly
- Range
-
51048220..51068958
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047428688.1 → XP_047284644.1 LETM1 domain-containing protein 1 isoform X2
- UniProtKB/TrEMBL
-
B2RCH7
-
XM_047428687.1 → XP_047284643.1 LETM1 domain-containing protein 1 isoform X1
- UniProtKB/TrEMBL
-
B2RCH7
Alternate T2T-CHM13v2.0
Genomic
-
NC_060936.1 Alternate T2T-CHM13v2.0
- Range
-
51011103..51031877
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054371706.1 → XP_054227681.1 LETM1 domain-containing protein 1 isoform X2
- UniProtKB/TrEMBL
-
B2RCH7
-
XM_054371705.1 → XP_054227680.1 LETM1 domain-containing protein 1 isoform X1
- UniProtKB/TrEMBL
-
B2RCH7
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001024668.1: Suppressed sequence
- Description
- NM_001024668.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
-
NM_001024669.1: Suppressed sequence
- Description
- NM_001024669.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
-
NM_001024670.1: Suppressed sequence
- Description
- NM_001024670.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
-
NM_001024671.1: Suppressed sequence
- Description
- NM_001024671.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.