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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_042188.2 RefSeqGene
- Range
-
5223..13663
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001297438.2 → NP_001284367.1 vesicle-associated membrane protein 1 isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) contains an alternate 3' terminal exon, resulting in a novel 3' coding region and 3' UTR compared to variant 1. The encoded isoform (4) has a distinct C-terminus and is shorter than isoform 1. Isoforms 3 and 4 are the same length but differ in their C-termini.
- Source sequence(s)
-
AC005840
- Consensus CDS
-
CCDS73422.1
- UniProtKB/TrEMBL
- A8K0D3, F5GZV7
- Related
- ENSP00000444181.1, ENST00000535180.5
- Conserved Domains (1) summary
-
- cd15870
Location:32 → 94
- R-SNARE_VAMP2; SNARE motif of VAMP2
-
NM_014231.5 → NP_055046.1 vesicle-associated membrane protein 1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1), also known as VAMP-1A, encodes the longest isoform (1).
- Source sequence(s)
-
AC005840
- Consensus CDS
-
CCDS41740.1
- UniProtKB/Swiss-Prot
- A8MVP3, D3DUR3, O75468, P23763, Q15857, Q6FG94, Q8IVC9
- UniProtKB/TrEMBL
-
A8K0D3
- Related
- ENSP00000379602.3, ENST00000396308.4
- Conserved Domains (1) summary
-
- cd15870
Location:32 → 94
- R-SNARE_VAMP2; SNARE motif of VAMP2
-
NM_016830.4 → NP_058439.1 vesicle-associated membrane protein 1 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3), also known as VAMP-1B, contains an alternate 3' terminal exon, resulting in a novel 3' coding region and 3' UTR compared to variant 1. The encoded isoform (3) has a distinct C-terminus and is shorter than isoform 1. Isoforms 3 and 4 are the same length but differ in their C-termini.
- Source sequence(s)
-
AC005840
- Consensus CDS
-
CCDS44809.1
- UniProtKB/TrEMBL
-
A8K0D3
- Related
- ENSP00000383702.3, ENST00000400911.7
- Conserved Domains (1) summary
-
- cd15870
Location:32 → 94
- R-SNARE_VAMP2; SNARE motif of VAMP2
-
NM_199245.3 → NP_954740.1 vesicle-associated membrane protein 1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2), also known as VAMP-1D, has a different 3' structure, resulting in a novel 3' coding region and 3' UTR compared to variant 1. The encoded isoform (2) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AC005840
- Consensus CDS
-
CCDS31731.1
- UniProtKB/TrEMBL
-
A8K0D3
- Related
- ENSP00000355122.3, ENST00000361716.8
- Conserved Domains (1) summary
-
- cd15870
Location:32 → 94
- R-SNARE_VAMP2; SNARE motif of VAMP2
RNA
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NR_123717.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks an alternate internal exon and contains an alternate 3' terminal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC005840
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000012.12 Reference GRCh38.p14 Primary Assembly
- Range
-
6462237..6470677 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060936.1 Alternate T2T-CHM13v2.0
- Range
-
6472621..6481015 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)