U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TMBIM1 transmembrane BAX inhibitor motif containing 1 [ Homo sapiens (human) ]

    Gene ID: 64114, updated on 10-Dec-2024

    Summary

    Official Symbol
    TMBIM1provided by HGNC
    Official Full Name
    transmembrane BAX inhibitor motif containing 1provided by HGNC
    Primary source
    HGNC:HGNC:23410
    See related
    Ensembl:ENSG00000135926 MIM:610364; AllianceGenome:HGNC:23410
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LFG3; RECS1; MST100; PP1201; MSTP100
    Summary
    Enables death receptor binding activity. Involved in negative regulation of Fas signaling pathway; negative regulation of extrinsic apoptotic signaling pathway via death domain receptors; and negative regulation of protein localization to plasma membrane. Located in Golgi apparatus; endosome membrane; and lysosomal membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in esophagus (RPKM 69.4), fat (RPKM 68.5) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See TMBIM1 in Genome Data Viewer
    Location:
    2q35
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (218274197..218292503, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (218759890..218778207, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (219138920..219157226, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:219126185-219126990 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17115 Neighboring gene G protein-coupled bile acid receptor 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:219133153-219134038 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17116 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17117 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17118 Neighboring gene angio associated migratory cell protein Neighboring gene PNKD metallo-beta-lactamase domain containing Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:219150593-219151401 Neighboring gene microRNA 6513 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17119 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:219154375-219154874 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:219155794-219156758 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:219156759-219157721 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:219157904-219158750 Neighboring gene uncharacterized LOC105373881 Neighboring gene uncharacterized LOC105373880 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:219187601-219188196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:219191232-219191976 Neighboring gene small nucleolar RNA U13 Neighboring gene CATIP antisense RNA 2

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables calcium channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables death receptor binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in Golgi membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in endosome membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extracellular exosome HDA PubMed 
    located_in intracellular membrane-bounded organelle IDA
    Inferred from Direct Assay
    more info
     
    located_in lysosomal membrane HDA PubMed 
    located_in lysosomal membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
     
    located_in specific granule membrane TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    protein lifeguard 3
    Names
    transmembrane BAX inhibitor motif-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001321427.2NP_001308356.1  protein lifeguard 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021016
      Consensus CDS
      CCDS2412.1
      UniProtKB/Swiss-Prot
      B3KQY6, Q8N1R3, Q8TAM3, Q969X1, Q96K13
      UniProtKB/TrEMBL
      Q1MW40
      Related
      ENSP00000409738.1, ENST00000444881.5
      Conserved Domains (1) summary
      cd10428
      Location:89308
      LFG_like; Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis
    2. NM_001321428.2NP_001308357.1  protein lifeguard 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021016
      Consensus CDS
      CCDS2412.1
      UniProtKB/Swiss-Prot
      B3KQY6, Q8N1R3, Q8TAM3, Q969X1, Q96K13
      UniProtKB/TrEMBL
      Q1MW40
      Conserved Domains (1) summary
      cd10428
      Location:89308
      LFG_like; Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis
    3. NM_001321429.2NP_001308358.1  protein lifeguard 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021016
      Consensus CDS
      CCDS2412.1
      UniProtKB/Swiss-Prot
      B3KQY6, Q8N1R3, Q8TAM3, Q969X1, Q96K13
      UniProtKB/TrEMBL
      Q1MW40
      Conserved Domains (1) summary
      cd10428
      Location:89308
      LFG_like; Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis
    4. NM_001321430.2NP_001308359.1  protein lifeguard 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021016
      Consensus CDS
      CCDS2412.1
      UniProtKB/Swiss-Prot
      B3KQY6, Q8N1R3, Q8TAM3, Q969X1, Q96K13
      UniProtKB/TrEMBL
      Q1MW40
      Related
      ENSP00000380025.2, ENST00000396809.6
      Conserved Domains (1) summary
      cd10428
      Location:89308
      LFG_like; Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis
    5. NM_001321432.2NP_001308361.1  protein lifeguard 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021016
      Consensus CDS
      CCDS2412.1
      UniProtKB/Swiss-Prot
      B3KQY6, Q8N1R3, Q8TAM3, Q969X1, Q96K13
      UniProtKB/TrEMBL
      Q1MW40
      Conserved Domains (1) summary
      cd10428
      Location:89308
      LFG_like; Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis
    6. NM_001321433.2NP_001308362.1  protein lifeguard 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021016
      Consensus CDS
      CCDS2412.1
      UniProtKB/Swiss-Prot
      B3KQY6, Q8N1R3, Q8TAM3, Q969X1, Q96K13
      UniProtKB/TrEMBL
      Q1MW40
      Conserved Domains (1) summary
      cd10428
      Location:89308
      LFG_like; Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis
    7. NM_001321435.2NP_001308364.1  protein lifeguard 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021016
      Consensus CDS
      CCDS2412.1
      UniProtKB/Swiss-Prot
      B3KQY6, Q8N1R3, Q8TAM3, Q969X1, Q96K13
      UniProtKB/TrEMBL
      Q1MW40
      Conserved Domains (1) summary
      cd10428
      Location:89308
      LFG_like; Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis
    8. NM_001321436.2NP_001308365.1  protein lifeguard 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021016
      Consensus CDS
      CCDS2412.1
      UniProtKB/Swiss-Prot
      B3KQY6, Q8N1R3, Q8TAM3, Q969X1, Q96K13
      UniProtKB/TrEMBL
      Q1MW40
      Conserved Domains (1) summary
      cd10428
      Location:89308
      LFG_like; Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis
    9. NM_001321438.2NP_001308367.1  protein lifeguard 3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC021016
      UniProtKB/TrEMBL
      B3KSM0, B4DUD2
      Conserved Domains (1) summary
      cd10428
      Location:13197
      LFG_like; Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis
    10. NM_022152.6NP_071435.2  protein lifeguard 3 isoform 1

      See identical proteins and their annotated locations for NP_071435.2

      Status: VALIDATED

      Source sequence(s)
      AC021016
      Consensus CDS
      CCDS2412.1
      UniProtKB/Swiss-Prot
      B3KQY6, Q8N1R3, Q8TAM3, Q969X1, Q96K13
      UniProtKB/TrEMBL
      Q1MW40
      Related
      ENSP00000258412.3, ENST00000258412.8
      Conserved Domains (1) summary
      cd10428
      Location:89308
      LFG_like; Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis

    RNA

    1. NR_135643.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC021016

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      218274197..218292503 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      218759890..218778207 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)